J3_9H3G_026

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

CCU*AAAUA*UAAG

Length

12 nucleotides

Bulged bases

9H3G|1|A|A|3303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40896.1

Basepair signature

cWW-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

9H3G|1|A|C|3285
9H3G|1|A|C|3286
9H3G|1|A|U|3287
*
9H3G|1|A|A|3301
9H3G|1|A|A|3302
9H3G|1|A|A|3303
9H3G|1|A|U|3304
9H3G|1|A|A|3305
*
9H3G|1|A|U|3376
9H3G|1|A|A|3377
9H3G|1|A|A|3378
9H3G|1|A|G|3379

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AU

Large ribosomal subunit protein eL31y

Chain BM

Large ribosomal subunit protein uL22z

Chain BS

Large ribosomal subunit protein uL3z