Motif J3_44724.3 Version J3_44724.3 of this group appears in releases 3.54 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9	break		10		11		12	1-12	2-11	4-7	5-6	9-10
1	J3_4V9F_003	4V9F	0.2428	1	0	LSU rRNA	U	823	G	824	U	826	A	827	G	828	*	C	853	G	854	U	855	G	856	*	C	789	A	790	A	791	cWW	tSH	tHS	cWW	cWW
2	J3_5J7L_039	5J7L	0.1167	0	DA	LSU rRNA	C	732	G	733	A	734	A	735	C	736	*	G	760	A	761	U	762	G	763	*	C	698	A	699	G	700	cWW	tSH	tHS	cWW	cWW
3	J3_7RQB_005	7RQB	0.0977	0	1A	LSU rRNA	C	732	G	733	A	734	A	735	C	736	*	G	760	A	761	U	762	G	763	*	C	698	A	699	G	700	cWW	tSH	tHS	cWW	cWW
4	J3_4WF9_003	4WF9	0.1049	0	X	LSU rRNA	C	777	G	778	A	779	A	780	C	781	*	G	805	A	806	U	807	G	808	*	C	743	A	744	G	745	cWW	tSH	tHS	cWW	cWW
5	J3_7A0S_005	7A0S	0.0000	0	X	LSU rRNA	C	745	G	746	A	747	A	748	C	749	*	G	773	A	774	U	775	G	776	*	C	711	A	712	G	713	cWW	tSH	ntHS	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAGCGAACGAUG	4
CAAUGUUAGCGUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGAAAU	4
AGUUAGU	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-03
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-tSH-F-cWW-tHS-cWW-F
Heat map statistics: Min 0.07 | Avg 0.12 | Max 0.24

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