Motif J3_44724.3 Version J3_44724.3 of this group appears in releases 3.54 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 1-12 | 2-11 | 4-7 | 5-6 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_003 | 4V9F | 0.2428 | 1 | 0 | LSU rRNA | U | 823 | G | 824 | U | 826 | A | 827 | G | 828 | * | C | 853 | G | 854 | U | 855 | G | 856 | * | C | 789 | A | 790 | A | 791 | cWW | tSH | tHS | cWW | cWW |
| 2 | J3_5J7L_039 | 5J7L | 0.1167 | 0 | DA | LSU rRNA | C | 732 | G | 733 | A | 734 | A | 735 | C | 736 | * | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 698 | A | 699 | G | 700 | cWW | tSH | tHS | cWW | cWW |
| 3 | J3_7RQB_005 | 7RQB | 0.0977 | 0 | 1A | LSU rRNA | C | 732 | G | 733 | A | 734 | A | 735 | C | 736 | * | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 698 | A | 699 | G | 700 | cWW | tSH | tHS | cWW | cWW |
| 4 | J3_4WF9_003 | 4WF9 | 0.1049 | 0 | X | LSU rRNA | C | 777 | G | 778 | A | 779 | A | 780 | C | 781 | * | G | 805 | A | 806 | U | 807 | G | 808 | * | C | 743 | A | 744 | G | 745 | cWW | tSH | tHS | cWW | cWW |
| 5 | J3_7A0S_005 | 7A0S | 0.0000 | 0 | X | LSU rRNA | C | 745 | G | 746 | A | 747 | A | 748 | C | 749 | * | G | 773 | A | 774 | U | 775 | G | 776 | * | C | 711 | A | 712 | G | 713 | cWW | tSH | ntHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CGAAC*GAUG | 4 |
| CAA*UGUUAG*CGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GAA*AU | 4 |
| A*GUUA*GU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Heat map statistics
- Min 0.07 | Avg 0.12 | Max 0.24
Coloring options: