Motif J3_44724.6 Version J3_44724.6 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 1-12 | 2-11 | 4-7 | 5-6 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_003 | 4V9F | 0.2348 | 1 | 0 | LSU rRNA | U | 823 | G | 824 | U | 826 | A | 827 | G | 828 | * | C | 853 | G | 854 | U | 855 | G | 856 | * | C | 789 | A | 790 | A | 791 | cWW | tSH | tHS | cWW | cWW |
| 2 | J3_9DFE_008 | 9DFE | 0.0000 | 0 | 1A | LSU rRNA | C | 732 | G | 733 | A | 734 | A | 735 | C | 736 | * | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 698 | A | 699 | G | 700 | cWW | tSH | tHS | cWW | cWW |
| 3 | J3_5J7L_039 | 5J7L | 0.0769 | 0 | DA | LSU rRNA | C | 732 | G | 733 | A | 734 | A | 735 | C | 736 | * | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 698 | A | 699 | G | 700 | cWW | tSH | tHS | cWW | cWW |
| 4 | J3_4WF9_003 | 4WF9 | 0.0905 | 0 | X | LSU rRNA | C | 777 | G | 778 | A | 779 | A | 780 | C | 781 | * | G | 805 | A | 806 | U | 807 | G | 808 | * | C | 743 | A | 744 | G | 745 | cWW | tSH | tHS | cWW | cWW |
| 5 | J3_7A0S_005 | 7A0S | 0.1131 | 0 | X | LSU rRNA | C | 745 | G | 746 | A | 747 | A | 748 | C | 749 | * | G | 773 | A | 774 | U | 775 | G | 776 | * | C | 711 | A | 712 | G | 713 | cWW | tSH | ntHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CGAAC*GAUG | 4 |
| CAA*UGUUAG*CGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GAA*AU | 4 |
| A*GUUA*GU | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Heat map statistics
- Min 0.08 | Avg 0.12 | Max 0.24
Coloring options: