Motif J3_59787.1 Version J3_59787.1 of this group appears in releases 3.88 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 19 | 20 | 21 | 22 | break | 23 | 24 | 25 | 26 | 27 | 28 | 1-28 | 14-17 | 14-18 | 15-16 | 22-23 | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8C3A_057 | 8C3A | 0.0000 | 8 | 1 | LSU rRNA | C | 3230 | G | 3231 | G | 3232 | U | 3234 | G | 3236 | A | 3238 | A | 3239 | U | 3240 | G | 3241 | U | 3242 | C | 3243 | A | 3244 | A | 3245 | C | 3246 | A | 3247 | * | U | 3138 | U | 3139 | U | 3140 | U | 3141 | A | 3144 | U | 3145 | G | 3146 | * | C | 3177 | A | 3178 | U | 3179 | C | 3182 | A | 3183 | G | 3185 | cWW | ncWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUUAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCAACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUAGAU*AUAGCAG*GGAUAGCAAUGUCAAC | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F-F-F-F-F-cWW-F-F-F-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: