J3_8C3A_057

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUUAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCAACA

Length

36 nucleotides

Bulged bases

8C3A|1|1|A|3142, 8C3A|1|1|G|3143, 8C3A|1|1|A|3180, 8C3A|1|1|G|3181, 8C3A|1|1|G|3184, 8C3A|1|1|A|3233, 8C3A|1|1|A|3235, 8C3A|1|1|C|3237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59787.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F-F-F-F-F-cWW-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8C3A|1|1|U|3138
8C3A|1|1|U|3139
8C3A|1|1|U|3140
8C3A|1|1|U|3141
8C3A|1|1|A|3142
8C3A|1|1|G|3143
8C3A|1|1|A|3144
8C3A|1|1|U|3145
8C3A|1|1|G|3146
*
8C3A|1|1|C|3177
8C3A|1|1|A|3178
8C3A|1|1|U|3179
8C3A|1|1|A|3180
8C3A|1|1|G|3181
8C3A|1|1|C|3182
8C3A|1|1|A|3183
8C3A|1|1|G|3184
8C3A|1|1|G|3185
*
8C3A|1|1|C|3230
8C3A|1|1|G|3231
8C3A|1|1|G|3232
8C3A|1|1|A|3233
8C3A|1|1|U|3234
8C3A|1|1|A|3235
8C3A|1|1|G|3236
8C3A|1|1|C|3237
8C3A|1|1|A|3238
8C3A|1|1|A|3239
8C3A|1|1|U|3240
8C3A|1|1|G|3241
8C3A|1|1|U|3242
8C3A|1|1|C|3243
8C3A|1|1|A|3244
8C3A|1|1|A|3245
8C3A|1|1|C|3246
8C3A|1|1|A|3247

Current chains

Chain 1

25S

Nearby chains

Chain AG

60S ribosomal protein L33-A

Chain n

60S ribosomal protein L6

Chain u

60S ribosomal protein L14-B

Chain w

Ribosomal protein L13

Chain x

Ribosomal protein L22