#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10break 11 121-122-63-78-910-11
1 J3_5TBW_0025TBW0.122401+4 LSU rRNA + 5.8S rRNAA369U370G371A372A373A374A375G376*C403G404*C19U20cWWtWHtSHcWWcWW
2 J3_5J7L_0365J7L0.00000DA LSU rRNAG474C475G476A477A478A479A480G481*C509C510*G30C31cWWntWHtSHcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUGAAAAG*CG*CU1
GC*GCGAAAAG*CC1
Non-Watson-Crick part of the motif
SequenceCounts
UGAAAA**1
*CGAAAA*1

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.47
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-21
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Basepair signature
    cWW-tWH-cWW-tSH-F-cWW-F
    Heat map statistics
    Min 0.12 | Avg 0.06 | Max 0.12
    Help

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