Motif J3_65070.2 Version J3_65070.2 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	break		9		10	break		11		12	1-12	2-6	3-7	8-9	10-11
1	J3_5TBW_002	5TBW	0.1636	1+4	LSU rRNA + 5.8S rRNA	A	369	U	370	G	371	A	372	A	373	A	374	A	375	G	376	*	C	403	G	404	*	C	19	U	20	cWW	tWH	tSH	cWW	cWW
2	J3_5J7L_036	5J7L	0.1156	DA	LSU rRNA	G	474	C	475	G	476	A	477	A	478	A	479	A	480	G	481	*	C	509	C	510	*	G	30	C	31	cWW	ntWH	tSH	cWW	cWW
3	J3_7A0S_001	7A0S	0.0000	X	LSU rRNA	G	485	U	486	G	487	A	488	A	489	A	490	A	491	G	492	*	C	519	C	520	*	G	30	C	31	cWW	tWH	ntSH	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUGAAAAGCGCU	1
GCGCGAAAAGCC	1
GCGUGAAAAGCC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAAAA**	1
CGAAAA	1
UGAAAA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-tWH-cWW-tSH-F-cWW-F
Heat map statistics: Min 0.12 | Avg 0.09 | Max 0.16

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