J3_9SUM_039

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AAC*GGACUA*UGGAAGUUU

Length

18 nucleotides

Bulged bases

9SUM|1|CA|U|1389, 9SUM|1|CA|U|1390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69856.2

Basepair signature

cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F

Number of instances in this motif group

3

Unit IDs

9SUM|1|CA|A|1306
9SUM|1|CA|A|1307
9SUM|1|CA|C|1308
*
9SUM|1|CA|G|1362
9SUM|1|CA|G|1363
9SUM|1|CA|A|1364
9SUM|1|CA|C|1365
9SUM|1|CA|U|1366
9SUM|1|CA|A|1367
*
9SUM|1|CA|U|1383
9SUM|1|CA|G|1384
9SUM|1|CA|G|1385
9SUM|1|CA|A|1386
9SUM|1|CA|A|1387
9SUM|1|CA|G|1388
9SUM|1|CA|U|1389
9SUM|1|CA|U|1390
9SUM|1|CA|U|1391

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZH

Small ribosomal subunit protein uS9

Chain ZI

40S ribosomal protein S17-B

Chain ZL

Small ribosomal subunit protein uS10

Chain ZV

Small ribosomal subunit protein uS14

Chain ZY

Small ribosomal subunit protein RACK1

Chain x

40S ribosomal protein uS7 (formerly S5)