Motif J3_77820.1 Version J3_77820.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 2-3 | 4-8 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_1MFQ_002 | 1MFQ | 0.0000 | 1 | A | SRP RNA | U | 128 | C | 129 | * | G | 168 | C | 170 | U | 171 | A | 172 | A | 173 | G | 174 | G | 175 | * | C | 221 | G | 222 | cWW | ncWW | cWW | |
| 2 | J3_1NBS_002 | 1NBS | 0.3904 | 1 | B | RNase P class B | G | 133 | A | 135 | * | U | 174 | U | 175 | G | 176 | A | 177 | A | 178 | A | 179 | G | 180 | * | C | 232 | C | 233 | cWW | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UC*GCCUAAGG*CG | 1 |
| GCA*UUGAAAG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *CCUAAG* | 1 |
| C*UGAAA* | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.39 | Avg 0.20 | Max 0.39
Coloring options: