Motif J3_84137.1 Version J3_84137.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-3 | 4-6 | 5-10 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8OI5_011 | 8OI5 | 0.3550 | 3 | 1 | LSU rRNA | U | 982 | U | 983 | * | A | 1058 | G | 1059 | A | 1060 | G | 1062 | * | C | 1088 | A | 1089 | U | 1092 | G | 1093 | A | 1094 | cWW | cWW | csS | cHW | cWW |
| 2 | J3_8P9A_051 | 8P9A | 0.0000 | 3 | AR | LSU rRNA | U | 986 | U | 987 | * | A | 1062 | G | 1063 | A | 1064 | G | 1066 | * | C | 1092 | A | 1093 | U | 1096 | G | 1097 | A | 1098 | cWW | cWW | csS | cWW | |
| 3 | J3_9AXU_011 | 9AXU | 0.3585 | 3 | 2 | LSU rRNA | U | 1018 | U | 1019 | * | A | 1094 | G | 1095 | A | 1096 | G | 1098 | * | C | 1124 | C | 1125 | C | 1128 | G | 1129 | A | 1130 | cWW | cWW | ncHW | cWW | |
| 4 | J3_8GLP_029 | 8GLP | 0.4554 | 2 | L5 | LSU rRNA | U | 1726 | U | 1727 | * | A | 1802 | G | 1803 | A | 1804 | G | 1806 | * | C | 1832 | G | 1833 | G | 1835 | G | 1836 | A | 1837 | cWW | cWW | csS | cHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UU*AGAAG*CAAUUGA | 1 |
| UU*AGAAG*CAUUUGA | 1 |
| UU*AGACG*CCAUCGA | 1 |
| UU*AGAAG*CGUGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GAA*AAUUG | 1 |
| *GAA*AUUUG | 1 |
| *GAC*CAUCG | 1 |
| *GAA*GUGG | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Heat map statistics
- Min 0.36 | Avg 0.41 | Max 0.87
Coloring options: