Motif J3_84189.2 Version J3_84189.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 1-13 | 2-11 | 2-12 | 3-9 | 4-8 | 4-12 | 6-7 | 9-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_005 | 4V9F | 0.7346 | 1 | 0 | LSU rRNA | C | 1404 | U | 1405 | A | 1406 | A | 1407 | U | 1408 | G | 1409 | * | C | 1700 | A | 1701 | G | 1703 | * | C | 1715 | A | 1716 | A | 1717 | G | 1718 | cWW | tWH | tWW | cWW | cWW | |||
| 2 | J3_4Y4O_023 | 4Y4O | 0.1083 | 1 | 2A | LSU rRNA | C | 1605 | G | 1606 | C | 1607 | A | 1608 | A | 1610 | C | 1611 | * | G | 1620 | U | 1621 | G | 1622 | * | C | 1306 | A | 1307 | A | 1308 | G | 1309 | cWW | tSH | tHH | tHW | tWW | cWW | cWW | |
| 3 | J3_7A0S_007 | 7A0S | 0.0000 | 1 | X | LSU rRNA | C | 1621 | G | 1622 | C | 1623 | A | 1624 | A | 1626 | C | 1627 | * | G | 1636 | U | 1637 | G | 1638 | * | C | 1319 | A | 1320 | A | 1321 | G | 1322 | cWW | tSH | ntHH | tHW | ntWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*CGCAAAC*GUG | 2 |
| CUAAUG*CAUG*CAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*GCAAA*U | 2 |
| UAAU*AU*AA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Heat map statistics
- Min 0.11 | Avg 0.35 | Max 0.73
Coloring options: