J3_9AXU_019

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

AUUG*CUUAA*UGACAUU

Length

16 nucleotides

Bulged bases

9AXU|1|2|U|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9AXU|1|2|A|2520
9AXU|1|2|U|2521
9AXU|1|2|U|2522
9AXU|1|2|G|2523
*
9AXU|1|2|C|2608
9AXU|1|2|U|2609
9AXU|1|2|U|2610
9AXU|1|2|A|2611
9AXU|1|2|A|2612
*
9AXU|1|2|U|2686
9AXU|1|2|G|2687
9AXU|1|2|A|2688
9AXU|1|2|C|2689
9AXU|1|2|A|2690
9AXU|1|2|U|2691
9AXU|1|2|U|2692

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL2C

Chain T

Large ribosomal subunit protein eL8

Chain Z

Large ribosomal subunit protein eL15B

Chain u

Large ribosomal subunit protein eL36B