#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12break 13 14 15 16 171-174-176-107-812-13
1 J3_6JQ6_0016JQ60.00002URNA (81-MER)G69U70A72A73A74||AA75C77*G27||||11_555U28||||11_555G29||||11_555G30||||11_555G31||||11_555*C64||||11_555A65||||11_555G66||||11_555A67||||11_555C68||||11_555cWWcWStHScWWcWW
2 J3_6JQ6_0026JQ60.00022URNA (81-MER)G69||||11_555U70||||11_555A72||||11_555A73||||11_555A74||A||11_555A75||||11_555C77||||11_555*G27U28G29G30G31*C64A65G66A67C68cWWcWStHScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUGGG*CAGAC*GUUAAAACC1
GUUAAAACC*GUGGG*CAGAC1
Non-Watson-Crick part of the motif
SequenceCounts
UGG*AGA*UUAAAAC1
UUAAAAC*UGG*AGA1

Release history

Release3.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.88
Date2019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-11
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Basepair signature
    cWW-cWS-F-F-F-F-F-F-cWW-F-tHS-F-cWW-F
    Heat map statistics
    Min 0.00 | Avg 0.00 | Max 0.00
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.0721 s