#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9break 10 11 12 13 141-143-124-54-115-75-87-89-10
1 J3_8VTW_0408VTW0.156411A LSU rRNAG271|||VG271|||WG271|||XU271|||YC271|||ZG272G272|||B*C366G370*U269A270A271A271|||AC271|||BcWWtSHtWHncSscWWcWW
2 J3_4WF9_0224WF90.00001X LSU rRNAG295G296G297U298U299G300A302*U415G416*C272A273A274A275C276cWWntSHcSHtWHtWSncWWcWW
3 J3_7A0S_0037A0S0.19951X LSU rRNAG269G270G271U272U273G274A276*U382G383*C246A247A248A249C250cWWtSHncSHtWHntWScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAAC*GGGUUGUA*UG2
UAAAC*GGGUCGUG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
AAA*GGUUGU*2
AAA*GGUCGU*1

Release history

Release3.883.89
Date2024-09-112024-10-09
StatusNew id, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Basepair signature
    cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
    Heat map statistics
    Min 0.16 | Avg 0.13 | Max 0.22
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1073 s