Motif J4_00691.1 Version J4_00691.1 of this group appears in releases 3.87 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_1NBS_002 | 1NBS | 0.3674 | 0 | RNase P | B | RNase P class B | G | 90 | C | 91 | * | G | 112 | G | 113 | * | C | 131 | G | 132 | * | C | 234 | C | 235 | cWW | cWW | cWW | cWW |
| 2 | J4_8S95_002 | 8S95 | 0.2118 | 1 | C | Enterovirus 5' cloverleaf cis-acting replication element | G | 39 | C | 40 | * | G | 64 | G | 65 | * | C | 75 | G | 77 | * | C | 110 | C | 111 | cWW | cWW | cWW | cWW | |
| 3 | J4_1U9S_001 | 1U9S | 0.0000 | 0 | RNase P | A | RIBONUCLEASE P | G | 79 | C | 80 | * | G | 94 | G | 95 | * | C | 109 | G | 110 | * | C | 230 | C | 231 | cWW | cWW | cWW | cWW |
| 4 | J4_8VMB_001 | 8VMB | 0.2311 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 8 | G | 9 | * | C | 33 | A | 34 | * | U | 44 | G | 45 | * | C | 77 | C | 78 | cWW | cWW | cWW | cWW | |
| 5 | J4_8VMA_001 | 8VMA | 0.2790 | 0 | C | Enterovirus 5' cloverleaf cis-acting replication element | G | 8 | G | 9 | * | C | 33 | A | 34 | * | U | 44 | G | 45 | * | C | 80 | C | 81 | cWW | cWW | cWW | cWW | |
| 6 | J4_8SP9_002 | 8SP9 | 0.3653 | 0 | C | Enterovirus 5' cloverleaf cis-acting replication element | G | 38 | C | 39 | * | G | 63 | G | 64 | * | C | 74 | G | 75 | * | C | 108 | C | 109 | cWW | cWW | cWW | cWW | |
| 7 | J4_8VM8_001 | 8VM8 | 0.4710 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 10 | C | 11 | * | G | 35 | G | 36 | * | C | 46 | G | 47 | * | C | 83 | C | 84 | cWW | cWW | cWW | cWW | |
| 8 | J4_8DP3_001 | 8DP3 | 0.3901 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 10 | C | 11 | * | G | 35 | G | 36 | * | C | 46 | G | 47 | * | C | 80 | C | 81 | cWW | cWW | cWW | cWW | |
| 9 | J4_8VM9_002 | 8VM9 | 0.3167 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 8 | C | 9 | * | G | 30 | A | 31 | * | U | 41 | G | 42 | * | C | 77 | C | 78 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GG*CG*CC | 5 |
| GG*CA*UG*CC | 2 |
| GC*GG*CGG*CC | 1 |
| GC*GA*UG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *** | 8 |
| **G* | 1 |
Release history
| Release | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- RNase P (2)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.34 | Max 0.56
Coloring options: