Motif J4_00691.2 Version J4_00691.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_1NBS_002 | 1NBS | 0.3486 | 0 | RNase P | B | RNase P class B | G | 90 | C | 91 | * | G | 112 | G | 113 | * | C | 131 | G | 132 | * | C | 234 | C | 235 | cWW | cWW | cWW | cWW |
| 2 | J4_8VMA_001 | 8VMA | 0.0000 | 0 | C | Enterovirus 5' cloverleaf cis-acting replication element | G | 8 | G | 9 | * | C | 33 | A | 34 | * | U | 44 | G | 45 | * | C | 80 | C | 81 | cWW | cWW | cWW | cWW | |
| 3 | J4_8VMB_001 | 8VMB | 0.2179 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 8 | G | 9 | * | C | 33 | A | 34 | * | U | 44 | G | 45 | * | C | 77 | C | 78 | cWW | cWW | cWW | cWW | |
| 4 | J4_1U9S_001 | 1U9S | 0.2790 | 0 | RNase P | A | RIBONUCLEASE P | G | 79 | C | 80 | * | G | 94 | G | 95 | * | C | 109 | G | 110 | * | C | 230 | C | 231 | cWW | cWW | cWW | cWW |
| 5 | J4_8S95_002 | 8S95 | 0.3118 | 1 | C | Enterovirus 5' cloverleaf cis-acting replication element | G | 39 | C | 40 | * | G | 64 | G | 65 | * | C | 75 | G | 77 | * | C | 110 | C | 111 | cWW | cWW | cWW | cWW | |
| 6 | J4_8VM9_002 | 8VM9 | 0.4236 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 8 | C | 9 | * | G | 30 | A | 31 | * | U | 41 | G | 42 | * | C | 77 | C | 78 | cWW | cWW | cWW | cWW | |
| 7 | J4_8DP3_001 | 8DP3 | 0.3815 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 10 | C | 11 | * | G | 35 | G | 36 | * | C | 46 | G | 47 | * | C | 80 | C | 81 | cWW | cWW | cWW | cWW | |
| 8 | J4_8VM8_001 | 8VM8 | 0.4170 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 10 | C | 11 | * | G | 35 | G | 36 | * | C | 46 | G | 47 | * | C | 83 | C | 84 | cWW | cWW | cWW | cWW | |
| 9 | J4_8SP9_002 | 8SP9 | 0.2568 | 0 | C | Enterovirus 5' cloverleaf cis-acting replication element | G | 38 | C | 39 | * | G | 63 | G | 64 | * | C | 74 | G | 75 | * | C | 108 | C | 109 | cWW | cWW | cWW | cWW | |
| 10 | J4_7VYX_003 | 7VYX | 0.3167 | 0 | C | sgRNA | C | 6 | U | 7 | * | A | 59 | C | 60 | * | G | 82 | C | 83 | * | G | 103 | G | 104 | ncWW | cWW | cWW | cWW | |
| 11 | J4_1M5K_001 | 1M5K | 0.3235 | 0 | B+A | RNA HAIRPIN RIBOZYME | U | 84 | G | 85 | * | C | 7 | U | 8 | * | A | 14 | A | 15 | * | U | 68 | A | 69 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GG*CG*CC | 5 |
| GG*CA*UG*CC | 2 |
| GC*GG*CGG*CC | 1 |
| GC*GA*UG*CC | 1 |
| CU*AC*GC*GG | 1 |
| CU*AA*UA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *** | 10 |
| **G* | 1 |
- Annotations
-
- (9)
- RNase P (2)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.37 | Max 0.66
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