#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5break 6 7break 8 9break 10 11 12 131-133-74-55-67-89-10
1 J4_3SKI_0013SKI0.85950Purine riboswitchARNA (68-MER)A30C31A32G33G34*U52G53*C60C61*G78A79C80U81cWWcSHcWWcWWcWW
2 J4_3SKL_0023SKL0.86890Purine riboswitchBRNA (66-MER)A29C30A31G32G33*U51G52*C59C60*G77A78C79U80cWWcSHcWWcWWcWW
3 J4_9IWF_0029IWF0.46590Purine riboswitch (H)BPurine riboswitchA7U8A9A10G11*C31G32*C39C40*G62G63C64U65cWWtWScWWcWWcWW
4 J4_3LA5_0013LA50.09490Purine riboswitchAPurine riboswitchA21U22A23A24U25*A45G46*C53C54*G72A73C74U75cWWtWScWWcWWcWW
5 J4_1Y27_0011Y270.05710Purine riboswitchXPurine riboswitchA21U22A23A24U25*A45G46*C53C54*G72A73C74U75cWWtWScWWcWWcWW
6 J4_4XNR_0014XNR0.00000Purine riboswitchXPurine riboswitchA21U22A23A24U25*A45G46*C53C54*G72A73U74U75cWWtWScWWcWWcWW
7 J4_1Y26_0011Y260.04720Purine riboswitchXPurine riboswitchA21U22A23A24U25*A45G46*C53C54*G72A73U74U75cWWtWScWWcWWcWW
8 J4_4LX6_0014LX60.07430Purine riboswitchAPurine riboswitchA21U22A23A24U25*A45G46*C53C54*G72A73C74U75cWWtWScWWcWWcWW
9 J4_3IVN_0013IVN0.08000Purine riboswitchAPurine riboswitchA12U13A14A15C16*G36G37*C44C45*G63A64C65U66cWWtWScWWcWWcWW
10 J4_3RKF_0033RKF0.09710Purine riboswitchCGuanine riboswitchA21U22A23A24C25*G45G46*C53C54*G72A73C74U75cWWtWScWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUAAU*AG*CC*GACU3
ACAGG*UG*CC*GACU2
AUAAU*AG*CC*GAUU2
AUAAC*GG*CC*GACU2
AUAAG*CG*CC*GGCU1
Non-Watson-Crick part of the motif
SequenceCounts
UAA***AC5
CAG***AC2
UAA***AU2
UAA***GC1

Release history

Release3.983.99
Date2025-06-182025-07-16
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Purine riboswitch (9)
  • Purine riboswitch (H) (1)
  • Basepair signature
    cWW-F-F-tWS-F-F-cWW-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.37 | Max 0.87
    Help

    Coloring options:

    J4_3SKI_001:J4_3SKI_001 = 0J4_3SKI_001:J4_3SKL_002 = 0.1081J4_3SKI_001:J4_9IWF_002 = 0.6971J4_3SKI_001:J4_3LA5_001 = 0.855J4_3SKI_001:J4_1Y27_001 = 0.8518J4_3SKI_001:J4_4XNR_001 = 0.8595J4_3SKI_001:J4_1Y26_001 = 0.8633J4_3SKI_001:J4_4LX6_001 = 0.8542J4_3SKI_001:J4_3IVN_001 = 0.8438J4_3SKI_001:J4_3RKF_003 = 0.8531J4_3SKL_002:J4_3SKI_001 = 0.1081J4_3SKL_002:J4_3SKL_002 = 0J4_3SKL_002:J4_9IWF_002 = 0.6952J4_3SKL_002:J4_3LA5_001 = 0.863J4_3SKL_002:J4_1Y27_001 = 0.8598J4_3SKL_002:J4_4XNR_001 = 0.8689J4_3SKL_002:J4_1Y26_001 = 0.8749J4_3SKL_002:J4_4LX6_001 = 0.8643J4_3SKL_002:J4_3IVN_001 = 0.8563J4_3SKL_002:J4_3RKF_003 = 0.8596J4_9IWF_002:J4_3SKI_001 = 0.6971J4_9IWF_002:J4_3SKL_002 = 0.6952J4_9IWF_002:J4_9IWF_002 = 0J4_9IWF_002:J4_3LA5_001 = 0.4571J4_9IWF_002:J4_1Y27_001 = 0.4609J4_9IWF_002:J4_4XNR_001 = 0.4659J4_9IWF_002:J4_1Y26_001 = 0.4662J4_9IWF_002:J4_4LX6_001 = 0.4583J4_9IWF_002:J4_3IVN_001 = 0.4571J4_9IWF_002:J4_3RKF_003 = 0.462J4_3LA5_001:J4_3SKI_001 = 0.855J4_3LA5_001:J4_3SKL_002 = 0.863J4_3LA5_001:J4_9IWF_002 = 0.4571J4_3LA5_001:J4_3LA5_001 = 0J4_3LA5_001:J4_1Y27_001 = 0.0968J4_3LA5_001:J4_4XNR_001 = 0.0949J4_3LA5_001:J4_1Y26_001 = 0.0937J4_3LA5_001:J4_4LX6_001 = 0.0869J4_3LA5_001:J4_3IVN_001 = 0.1122J4_3LA5_001:J4_3RKF_003 = 0.1145J4_1Y27_001:J4_3SKI_001 = 0.8518J4_1Y27_001:J4_3SKL_002 = 0.8598J4_1Y27_001:J4_9IWF_002 = 0.4609J4_1Y27_001:J4_3LA5_001 = 0.0968J4_1Y27_001:J4_1Y27_001 = 0J4_1Y27_001:J4_4XNR_001 = 0.0571J4_1Y27_001:J4_1Y26_001 = 0.0743J4_1Y27_001:J4_4LX6_001 = 0.0898J4_1Y27_001:J4_3IVN_001 = 0.1003J4_1Y27_001:J4_3RKF_003 = 0.1001J4_4XNR_001:J4_3SKI_001 = 0.8595J4_4XNR_001:J4_3SKL_002 = 0.8689J4_4XNR_001:J4_9IWF_002 = 0.4659J4_4XNR_001:J4_3LA5_001 = 0.0949J4_4XNR_001:J4_1Y27_001 = 0.0571J4_4XNR_001:J4_4XNR_001 = 0J4_4XNR_001:J4_1Y26_001 = 0.0472J4_4XNR_001:J4_4LX6_001 = 0.0743J4_4XNR_001:J4_3IVN_001 = 0.08J4_4XNR_001:J4_3RKF_003 = 0.0971J4_1Y26_001:J4_3SKI_001 = 0.8633J4_1Y26_001:J4_3SKL_002 = 0.8749J4_1Y26_001:J4_9IWF_002 = 0.4662J4_1Y26_001:J4_3LA5_001 = 0.0937J4_1Y26_001:J4_1Y27_001 = 0.0743J4_1Y26_001:J4_4XNR_001 = 0.0472J4_1Y26_001:J4_1Y26_001 = 0J4_1Y26_001:J4_4LX6_001 = 0.0678J4_1Y26_001:J4_3IVN_001 = 0.0834J4_1Y26_001:J4_3RKF_003 = 0.1085J4_4LX6_001:J4_3SKI_001 = 0.8542J4_4LX6_001:J4_3SKL_002 = 0.8643J4_4LX6_001:J4_9IWF_002 = 0.4583J4_4LX6_001:J4_3LA5_001 = 0.0869J4_4LX6_001:J4_1Y27_001 = 0.0898J4_4LX6_001:J4_4XNR_001 = 0.0743J4_4LX6_001:J4_1Y26_001 = 0.0678J4_4LX6_001:J4_4LX6_001 = 0J4_4LX6_001:J4_3IVN_001 = 0.0832J4_4LX6_001:J4_3RKF_003 = 0.1074J4_3IVN_001:J4_3SKI_001 = 0.8438J4_3IVN_001:J4_3SKL_002 = 0.8563J4_3IVN_001:J4_9IWF_002 = 0.4571J4_3IVN_001:J4_3LA5_001 = 0.1122J4_3IVN_001:J4_1Y27_001 = 0.1003J4_3IVN_001:J4_4XNR_001 = 0.08J4_3IVN_001:J4_1Y26_001 = 0.0834J4_3IVN_001:J4_4LX6_001 = 0.0832J4_3IVN_001:J4_3IVN_001 = 0J4_3IVN_001:J4_3RKF_003 = 0.1064J4_3RKF_003:J4_3SKI_001 = 0.8531J4_3RKF_003:J4_3SKL_002 = 0.8596J4_3RKF_003:J4_9IWF_002 = 0.462J4_3RKF_003:J4_3LA5_001 = 0.1145J4_3RKF_003:J4_1Y27_001 = 0.1001J4_3RKF_003:J4_4XNR_001 = 0.0971J4_3RKF_003:J4_1Y26_001 = 0.1085J4_3RKF_003:J4_4LX6_001 = 0.1074J4_3RKF_003:J4_3IVN_001 = 0.1064J4_3RKF_003:J4_3RKF_003 = 0J4_3SKI_001J4_3SKL_002J4_9IWF_002J4_3LA5_001J4_1Y27_001J4_4XNR_001J4_1Y26_001J4_4LX6_001J4_3IVN_001J4_3RKF_003Discrepancy0.000.200.400.600.80
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