Motif J4_10026.1 Version J4_10026.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 1-16 | 3-7 | 4-9 | 5-6 | 7-8 | 10-13 | 11-12 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_9UW0_001 | 9UW0 | 0.1104 | 0 | X | RNA (65-MER) | A | 10 | U | 11 | A | 12 | U | 13 | C | 14 | * | G | 34 | G | 35 | * | C | 41 | A | 42 | U | 43 | A | 44 | * | U | 60 | U | 61 | A | 62 | C | 63 | U | 64 | cWW | tWS | cWH | cWW | cWW | cWw | cWW |
| 2 | J4_8KEB_001 | 8KEB | 0.0000 | 0 | A | RNA (72-MER) | A | 9 | U | 10 | A | 11 | U | 12 | C | 13 | * | G | 33 | G | 34 | * | C | 40 | A | 41 | U | 42 | A | 43 | * | U | 59 | U | 60 | A | 61 | C | 62 | U | 63 | cWW | tWS | cWH | cWW | cWW | cWw | cWW |
| 3 | J4_9LKV_001 | 9LKV | 0.1243 | 0 | X | RNA (73-MER) | A | 10 | U | 11 | A | 12 | U | 13 | C | 14 | * | G | 34 | G | 35 | * | C | 41 | A | 42 | U | 43 | A | 44 | * | U | 60 | U | 61 | A | 62 | C | 63 | U | 64 | cWW | tWS | cWH | cWW | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAUC*GG*CAUA*UUACU | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAU**AU*UAC | 3 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-tWS-F-cWH-cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.09 | Max 0.19
Coloring options: