RNA 3D Hub //

4-way Junction Loop Motif Atlas Release 4.1

Polymorphs
#Varna 2DMotifCore NtsInstances
1
  • J4_95067.1
J4_95067.1
  • Basepair signature: cWW-F-cWW-cWW-cHS-F-cWW-cWW
  • History status: New id, 1 parent
  • tRNA junction (42)
  • Virus junction (3)
    		• 1348
    2
    • J4_86610.1
    		J4_86610.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: New id, 1 parent
  • RNase P junction (2)
    		• 812
    3
    • J4_07491.4
    		J4_07491.4
    • Basepair signature: cWW-F-F-tWS-F-F-cWW-cWW-cWW
    • History status: Updated, 1 parent
  • Purine riboswitch junction (9)
    		• 1310
    4
    • J4_94698.1
    		J4_94698.1
    • Basepair signature: cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
    • History status: Exact match
    		1810
    5
    • J4_48150.1
    		J4_48150.1
    • Basepair signature: cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
    • History status: Exact match
    		168
    6
    • J4_77353.1
    		J4_77353.1
    • Basepair signature: cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
    • History status: Exact match
    		208
    7
    • J4_94432.1
    		J4_94432.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: New id, 2 parents
    		87
    8
    • J4_75575.1
    		J4_75575.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
    		87
    9
    • J4_98139.1
    		J4_98139.1
    • Basepair signature: cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
    • History status: Exact match
    		146
    10
    • J4_35610.2
    		J4_35610.2
    • Basepair signature: cWW-F-cWW-cWW-cHS-F-cWW
    • History status: Updated, 1 parent
  • tRNA junction (3)
    		• 116
    11
    • J4_78485.1
    		J4_78485.1
    • Basepair signature: cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
    • History status: Exact match
    		216
    12
    • J4_42306.1
    		J4_42306.1
    • Basepair signature: cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
    • History status: Exact match
    		205
    13
    • J4_14595.1
    		J4_14595.1
    • Basepair signature: cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
    • History status: Exact match
    		195
    14
    • J4_36296.3
    		J4_36296.3
    • Basepair signature: cWW-F-cWW-cWW-F-F-F-cWW
    • History status: Exact match
  • tRNA junction (5)
    		• 125
    15
    • J4_16174.1
    		J4_16174.1
    • Basepair signature: cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
    • History status: Exact match
    		175
    16
    • J4_61477.6
    		J4_61477.6
    • Basepair signature: cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
    • History status: Exact match
    		194
    17
    • J4_64571.6
    		J4_64571.6
    • Basepair signature: cWW-F-cWW-tSS-cWW-F-cWW
    • History status: Exact match
    		114
    18
    • J4_40477.2
    		J4_40477.2
    • Basepair signature: cWW-F-cWW-F-cWW-F-F-F-F-cWW-F
    • History status: Exact match
  • tRNA junction (3)
    		• 154
    19
    • J4_97085.4
    		J4_97085.4
    • Basepair signature: cWW-cWW-F-cWW-tHS-cWW-F-F
    • History status: Updated, 1 parent
    		133
    20
    • J4_10026.1
    		J4_10026.1
    • Basepair signature: cWW-F-F-tWS-F-cWH-cWW-cWW-cWW-cWW
    • History status: New id, 1 parent
    		163
    21
    • J4_43687.4
    		J4_43687.4
    • Basepair signature: cWW-cWW-cWW-cWW-cWW
    • History status: Updated, 1 parent
  • RNase P junction (1)
    		• 103
    22
    • J4_59590.1
    		J4_59590.1
    • Basepair signature: cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
    • History status: Exact match
    		153
    23
    • J4_34212.1
    		J4_34212.1
    • Basepair signature: cWW-F-cWW-F-F-F-cWW-F-cWW
    • History status: Exact match
    		133
    24
    • J4_15241.2
    		J4_15241.2
    • Basepair signature: cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
    • History status: Exact match
    		183
    25
    • J4_37757.1
    		J4_37757.1
    • Basepair signature: cWW-tSS-cWW-cWW-cWW-cWW
    • History status: Exact match
    		113
    26
    • J4_77044.5
    		J4_77044.5
    • Basepair signature: cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
    • History status: Exact match
    		153
    27
    • J4_40439.2
    		J4_40439.2
    • Basepair signature: cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
    • History status: Exact match
  • SAM-I riboswitch junction (3)
    		• 153
    28
    • J4_25222.1
    		J4_25222.1
    • Basepair signature: cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F
    • History status: New id, 1 parent
  • Cobalamin riboswitch junction (2)
    		• 172
    29
    • J4_82510.1
    		J4_82510.1
    • Basepair signature: cWW-cWW-cWW-cWW-F-cWW-F
    • History status: New id, 2 parents
  • tRNA junction (2)
    		• 122
    30
    • J4_43318.1
    		J4_43318.1
    • Basepair signature: cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
    • History status: Exact match
    		182
    31
    • J4_69783.1
    		J4_69783.1
    • Basepair signature: cWW-F-F-F-F-cWW-cWW-cWW
    • History status: Exact match
    		122
    32
    • J4_99805.1
    		J4_99805.1
    • Basepair signature: cWW-F-cWW-F-cWW-F-F-F-F-F-cWW
    • History status: New id, 1 parent
  • tRNA junction (2)
    		• 152
    33
    • J4_70672.1
    		J4_70672.1
    • Basepair signature: cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F
    • History status: Exact match
  • FMN riboswitch junction (1)
    		• 242
    34
    • J4_90044.1
    		J4_90044.1
    • Basepair signature: cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
    • History status: Exact match
    		152
    35
    • J4_59845.1
    		J4_59845.1
    • Basepair signature: cWW-tSW-F-cWW-F-F-cWW-F-F-cWW-F-F
    • History status: Exact match
    		172
    36
    • J4_75426.1
    		J4_75426.1
    • Basepair signature: cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
    • History status: Exact match
    		162
    37
    • J4_47264.1
    		J4_47264.1
    • Basepair signature: cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
    • History status: Exact match
    		202
    38
    • J4_63076.1
    		J4_63076.1
    • Basepair signature: cWW-tSS-cWW-cWW-cWW
    • History status: Exact match
  • class I ligase product junction (2)
    		• 92
    39
    • J4_36540.1
    		J4_36540.1
    • Basepair signature: cWW-cWW-F-F-F-cWW-F-cWW-F-F
    • History status: Exact match
  • FMN riboswitch junction (1)
    		• 152
    40
    • J4_95838.1
    		J4_95838.1
    • Basepair signature: cWW-F-F-cWW-F-F-cWW-cWW-F
    • History status: Exact match
    		132
    41
    • J4_21738.1
    		J4_21738.1
    • Basepair signature: cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
    • History status: Exact match
    		202
    42
    • J4_65285.1
    		J4_65285.1
    • Basepair signature: cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
    • History status: Exact match
  • tRNA junction (2)
    		• 152
    43
    • J4_54165.1
    		J4_54165.1
    • Basepair signature: cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F
    • History status: Exact match
    		171
    44
    • J4_69073.1
    		J4_69073.1
    • Basepair signature: cWW-cHS-cWW-cWS-cHW-cWW-cWW
    • History status: Exact match
    		111
    45
    • J4_09224.1
    		J4_09224.1
    • Basepair signature: cWW-F-F-F-cWW-tWH-F-cWW-F-F-F-tWS-tWH-F-F-F-F-F-cSH-cWW-F
    • History status: New id, no parents
  • RNase P junction (1)
    		• 271
    46
    • J4_55018.1
    		J4_55018.1
    • Basepair signature: cWW-tHS-F-cWW-tHS-cWW-F-cWW
    • History status: New id, no parents
    		141
    47
    • J4_28426.1
    		J4_28426.1
    • Basepair signature: cWW-F-cWW-F-F-F-F-F-cWW-cWW
    • History status: Exact match
  • SAM-I/IV riboswitch junction (1)
    		• 141
    48
    • J4_69347.1
    		J4_69347.1
    • Basepair signature: cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F
    • History status: Exact match
    		201
    49
    • J4_57327.1
    		J4_57327.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-cWW-F-cWW-F-F-F
    • History status: Exact match
    		181
    50
    • J4_98739.1
    		J4_98739.1
    • Basepair signature: cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F
    • History status: Exact match
    		231
    51
    • J4_28473.1
    		J4_28473.1
    • Basepair signature: cWW-F-F-F-cWW-cWW-F-cWW-F
    • History status: Exact match
    		131
    52
    • J4_88771.1
    		J4_88771.1
    • Basepair signature: cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
    • History status: Exact match
    		171
    53
    • J4_10571.1
    		J4_10571.1
    • Basepair signature: cWW-F-F-F-cWW-F-F-cWW-F
    • History status: Exact match
    		121
    54
    • J4_57344.1
    		J4_57344.1
    • Basepair signature: cWW-F-cWW-F-cWW-cSH-cWW
    • History status: Exact match
    		111
    55
    • J4_31123.1
    		J4_31123.1
    • Basepair signature: cWW-F-cSW-F-F-tWH-cWW-F-cHW-F-cWW-F-tWS-F-cWW-F-F-F-cSH-tWH-cWW-F-F-F
    • History status: New id, no parents
  • RNase P junction (1)
    		• 311
    56
    • J4_45582.1
    		J4_45582.1
    • Basepair signature: cWW-F-cWW-cWW-cWW-cWW
    • History status: Exact match
    		111
    57
    • J4_11418.1
    		J4_11418.1
    • Basepair signature: cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
    • History status: Exact match
    		191
    58
    • J4_99897.1
    		J4_99897.1
    • Basepair signature: cWW-F-cWW-cWW-cWW-cWW-F-cWW
    • History status: Exact match
    		141
    59
    • J4_72452.1
    		J4_72452.1
    • Basepair signature: cWW-cWW-F-cWW-F-cWW-cWW-F-cWW-F
    • History status: New id, no parents
    		161
    60
    • J4_46448.1
    		J4_46448.1
    • Basepair signature: cWW-cWS-tSH-cWW-cWW-cWW
    • History status: Exact match
    		111
    61
    • J4_91813.1
    		J4_91813.1
    • Basepair signature: cWW-cWW-F-tSH-cWW-F-F-F-cWW-F
    • History status: Exact match
    		151
    62
    • J4_13620.1
    		J4_13620.1
    • Basepair signature: cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
    • History status: Exact match
    		181
    63
    • J4_47478.1
    		J4_47478.1
    • Basepair signature: cWW-F-cWW-cWS-cHW-cWW-cWW
    • History status: Exact match
    		111
    64
    • J4_75852.1
    		J4_75852.1
    • Basepair signature: cWW-tSW-cSS-cWW-F-cSH-cWW-cWW-F-F
    • History status: Exact match
    		161
    65
    • J4_50729.1
    		J4_50729.1
    • Basepair signature: cWW-cSS-cWW-F-cWW-F-F-F-cWW-F-F
    • History status: New id, 1 parent
  • tRNA junction (1)
    		• 161
    66
    • J4_65052.1
    		J4_65052.1
    • Basepair signature: cWW-cWW-cWW-F-cWW-tWS-cWW
    • History status: Exact match
    		121
    67
    • J4_04237.1
    		J4_04237.1
    • Basepair signature: cWW-F-F-F-cWH-F-F-F-F-cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		291
    68
    • J4_51436.1
    		J4_51436.1
    • Basepair signature: cWW-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F
    • History status: New id, no parents
  • tRNA junction (1)
    		• 171
    69
    • J4_96082.1
    		J4_96082.1
    • Basepair signature: cWW-cWW-cWW-F-cWW-cWW-cWW
    • History status: Exact match
    		131
    70
    • J4_24220.1
    		J4_24220.1
    • Basepair signature: cWW-F-F-tWS-F-F-cWW-tHS-cWW-cWW
    • History status: Exact match
    		151

    Coloring options:


    Exact match 53; Updated, 1 parent 4; New id, no parents 5; New id, 1 parent 6; New id, 2 parents 2;

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