Motif J4_10313.3 Version J4_10313.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-3 | 6-15 | 7-8 | 9-10 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_5J7L_023 | 5J7L | 0.1643 | 1 | DA | LSU rRNA | U | 1313 | C | 1314 | * | G | 1338 | G | 1339 | U | 1340 | A | 1342 | G | 1343 | * | C | 1404 | U | 1405 | * | A | 1597 | A | 1598 | U | 1599 | C | 1600 | G | 1601 | U | 1602 | A | 1603 | cWW | cWW | tHW | cWW | cWW |
| 2 | J4_4V9F_005 | 4V9F | 0.1396 | 1 | 0 | LSU rRNA | U | 1419 | C | 1420 | * | G | 1444 | G | 1445 | U | 1446 | A | 1448 | G | 1449 | * | C | 1513 | C | 1514 | * | G | 1672 | U | 1673 | C | 1674 | C | 1675 | G | 1676 | U | 1677 | A | 1678 | cWW | cWW | tHW | cWW | cWW |
| 3 | J4_7RQB_005 | 7RQB | 0.0000 | 1 | 1A | LSU rRNA | U | 1313 | C | 1314 | * | G | 1338 | G | 1339 | U | 1340 | A | 1342 | G | 1343 | * | C | 1404 | U | 1405 | * | A | 1597 | C | 1598 | C | 1599 | C | 1600 | G | 1601 | U | 1602 | A | 1603 | cWW | cWW | tHW | cWW | cWW |
| 4 | J4_4WF9_006 | 4WF9 | 0.1108 | 1 | X | LSU rRNA | U | 1350 | C | 1351 | * | G | 1375 | G | 1376 | U | 1377 | A | 1379 | G | 1380 | * | C | 1441 | C | 1442 | * | G | 1641 | C | 1642 | C | 1643 | C | 1644 | G | 1645 | U | 1646 | A | 1647 | cWW | cWW | tHW | cWW | cWW |
| 5 | J4_7A0S_006 | 7A0S | 0.1515 | 1 | X | LSU rRNA | U | 1326 | C | 1327 | * | G | 1351 | G | 1352 | A | 1353 | A | 1355 | G | 1356 | * | C | 1417 | C | 1418 | * | G | 1613 | C | 1614 | C | 1615 | C | 1616 | G | 1617 | U | 1618 | A | 1619 | cWW | cWW | ntHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UC*GGUGAG*CU*AAUCGUA | 1 |
| UC*GGUUAG*CC*GUCCGUA | 1 |
| UC*GGUUAG*CU*ACCCGUA | 1 |
| UC*GGUUAG*CC*GCCCGUA | 1 |
| UC*GGAAAG*CC*GCCCGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GUUA**CCCGU | 2 |
| *GUGA**AUCGU | 1 |
| *GUUA**UCCGU | 1 |
| *GAAA**CCCGU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.13 | Max 0.25
Coloring options: