Motif J4_10408.1 Version J4_10408.1 of this group appears in releases 3.15 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 1-18 | 3-13 | 5-6 | 5-11 | 8-9 | 14-15 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_6GSK_031 | 6GSK | 0.0000 | 2 | 3L | tRNA | A | 5 | U | 6 | U | 8 | A | 9 | G | 10 | * | C | 25 | G | 26 | C | 27 | * | G | 43 | A | 44 | G | 45 | G | 46 | C | 48 | G | 49 | * | C | 65 | U | 66 | A | 67 | U | 68 | cWW | ncSH | cWW | cHS | cWW | cWW |
| 2 | J4_6GSJ_031 | 6GSJ | 0.1129 | 2 | 3L | tRNA | A | 5 | U | 6 | U | 8 | A | 9 | G | 10 | * | C | 25 | G | 26 | C | 27 | * | G | 43 | A | 44 | G | 45 | G | 46 | C | 48 | G | 49 | * | C | 65 | U | 66 | A | 67 | U | 68 | cWW | ncSH | cWW | cHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAUAG*CGC*GAGGUCG*CUAU | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAUA*G*AGGUC*UA | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.06 | Max 0.11
Coloring options: