Motif J4_10408.2 Version J4_10408.2 of this group appears in releases 3.18 to 3.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8	break		9		10		11		12		13		14	break		15		16		17		18	1-18	3-13	5-6	5-11	7-10	8-9	14-15
1	J4_6OF1_014	6OF1	0.3485	2	1w	tRNA	G	5	A	6	4SU	8	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	7MG	46	C	48	G	49	*	C	65	A	66	U	67	C	68	cWW		cWW	cHS	cWW	cWW	cWW
2	J4_6GSJ_031	6GSJ	0.0000	2	3L	tRNA	A	5	U	6	U	8	A	9	G	10	*	C	25	G	26	C	27	*	G	43	A	44	G	45	G	46	C	48	G	49	*	C	65	U	66	A	67	U	68	cWW	ncSH	cWW	cHS		cWW	cWW
3	J4_6GSK_031	6GSK	0.1129	2	3L	tRNA	A	5	U	6	U	8	A	9	G	10	*	C	25	G	26	C	27	*	G	43	A	44	G	45	G	46	C	48	G	49	*	C	65	U	66	A	67	U	68	cWW	ncSH	cWW	cHS		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUAUAGCGCGAGGUCG*CUAU	2
GAU(4SU)AGCACGGG(7MG)UCG*CAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAUAGAGGUC*UA	2
AU(4SU)AAGG(7MG)UC*AU	1

Release history

Release	3.18
Date	2019-05-03
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
Heat map statistics: Min 0.11 | Avg 0.19 | Max 0.40

Help

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The Resolver thinks MMCif

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view

reading 1281 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

3 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1281 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 131 ms

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3 models

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44 atoms selected

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Coloring options: Nucleotide numbers

Motif J4_10408.2 Version J4_10408.2 of this group appears in releases 3.18 to 3.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif J4_10408.2 Version J4_10408.2 of this group appears in releases 3.18 to 3.18

Download

Csv

Json