Motif J4_10408.2 Version J4_10408.2 of this group appears in releases 3.18 to 3.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 1-18 | 3-13 | 5-6 | 5-11 | 7-10 | 8-9 | 14-15 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_6OF1_014 | 6OF1 | 0.3485 | 2 | 1w | tRNA | G | 5 | A | 6 | 4SU | 8 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | G | 45 | 7MG | 46 | C | 48 | G | 49 | * | C | 65 | A | 66 | U | 67 | C | 68 | cWW | cWW | cHS | cWW | cWW | cWW | |
| 2 | J4_6GSJ_031 | 6GSJ | 0.0000 | 2 | 3L | tRNA | A | 5 | U | 6 | U | 8 | A | 9 | G | 10 | * | C | 25 | G | 26 | C | 27 | * | G | 43 | A | 44 | G | 45 | G | 46 | C | 48 | G | 49 | * | C | 65 | U | 66 | A | 67 | U | 68 | cWW | ncSH | cWW | cHS | cWW | cWW | |
| 3 | J4_6GSK_031 | 6GSK | 0.1129 | 2 | 3L | tRNA | A | 5 | U | 6 | U | 8 | A | 9 | G | 10 | * | C | 25 | G | 26 | C | 27 | * | G | 43 | A | 44 | G | 45 | G | 46 | C | 48 | G | 49 | * | C | 65 | U | 66 | A | 67 | U | 68 | cWW | ncSH | cWW | cHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAUAG*CGC*GAGGUCG*CUAU | 2 |
| GAU(4SU)AG*CAC*GGG(7MG)UCG*CAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAUA*G*AGGUC*UA | 2 |
| AU(4SU)A*A*GG(7MG)UC*AU | 1 |
Release history
| Release | 3.18 |
|---|---|
| Date | 2019-05-03 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.19 | Max 0.40
Coloring options: