J4_9SUM_007

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9SUM|1|A|U|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_21738.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F

Number of instances in this motif group

3

Unit IDs

9SUM|1|A|C|2107
9SUM|1|A|U|2108
9SUM|1|A|G|2109
*
9SUM|1|A|C|2163
9SUM|1|A|G|2164
*
9SUM|1|A|C|2182
9SUM|1|A|U|2183
9SUM|1|A|U|2184
9SUM|1|A|A|2185
9SUM|1|A|A|2186
9SUM|1|A|G|2187
9SUM|1|A|G|2188
9SUM|1|A|U|2189
9SUM|1|A|A|2190
9SUM|1|A|G|2191
*
9SUM|1|A|U|2225
9SUM|1|A|G|2226
9SUM|1|A|A|2227
9SUM|1|A|A|2228
9SUM|1|A|U|2229
9SUM|1|A|G|2230

Current chains

Chain A

25S rRNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain D

60S ribosomal protein L2-A

Chain p

Small ribosomal subunit protein eS32