Motif J4_22413.3 Version J4_22413.3 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 3-4 | 3-8 | 3-9 | 5-9 | 6-7 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_2IY5_001 | 2IY5 | 0.0000 | 3 | T | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | U | 27 | * | A | 43 | G | 44 | U | 45 | G | 46 | C | 49 | * | G | 65 | C | 66 | cWW | cWW | ncHW | cWW | cWW | ||
| 2 | J4_5WT1_002 | 5WT1 | 0.5197 | 3 | C | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | U | 45 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAG*CAU*AGUGUCC*GC | 1 |
| GUAG*CAC*GGUGUCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*A*GUGUC* | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW-F
- Heat map statistics
- Min 0.52 | Avg 0.26 | Max 0.52
Coloring options: