Motif J4_31123.1 Version J4_31123.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | break | 23 | 24 | 25 | break | 26 | 27 | 28 | 29 | 30 | 31 | 1-31 | 2-18 | 4-8 | 4-16 | 5-20 | 6-11 | 6-15 | 7-10 | 8-17 | 12-13 | 13-14 | 16-20 | 22-23 | 22-27 | 24-28 | 25-26 | 25-30 | 26-29 | 28-30 | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_1U9S_003 | 1U9S | 0.0000 | 1 | RNase P junction | A | RNase P class A | C | 119 | A | 120 | C | 121 | A | 122 | G | 123 | A | 124 | G | 125 | A | 126 | A | 127 | A | 129 | G | 130 | A | 131 | C | 132 | * | G | 168 | G | 169 | U | 170 | G | 171 | A | 172 | A | 173 | A | 174 | C | 175 | G | 176 | * | C | 194 | G | 195 | C | 196 | * | G | 217 | G | 218 | C | 219 | A | 220 | C | 221 | G | 222 | cWW | ntHH | tWH | ncsS | ntSW | ncsS | ncHW | ncSs | tWS | cSH | cWW | tWH | cWW | cHW | cWW | cWW | cSW | ncSW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACAGAGAAGAGAC*GGUGAAACG*CGC*GGCACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAGAGAAGAGA*GUGAAAC*G*GCAC | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- RNase P junction (1)
- Basepair signature
- cWW-F-cSW-F-F-tWH-cWW-F-cHW-F-cWW-F-tWS-F-cWW-F-F-F-cSH-tWH-cWW-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: