J4_9AXU_003

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

9AXU|1|2|A|1486, 9AXU|1|2|U|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_34212.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9AXU|1|2|C|1485
9AXU|1|2|A|1486
9AXU|1|2|A|1487
9AXU|1|2|A|1488
9AXU|1|2|U|1489
9AXU|1|2|A|1490
9AXU|1|2|U|1491
*
9AXU|1|2|A|1509
9AXU|1|2|G|1510
*
9AXU|1|2|U|1932
9AXU|1|2|G|1933
9AXU|1|2|A|1934
9AXU|1|2|U|1935
*
9AXU|1|2|A|2440
9AXU|1|2|G|2441

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain b

Large ribosomal subunit protein uL22A

Chain d

Large ribosomal subunit protein eL19B

Chain p

Large ribosomal subunit protein eL31