Motif J4_40477.1 Version J4_40477.1 of this group appears in releases 3.98 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 1-15 | 2-11 | 4-5 | 4-9 | 4-10 | 6-9 | 6-10 | 7-8 | 13-14 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_5WT1_002 | 5WT1 | 0.5136 | 1 | C | tRNA | G | 7 | U | 8 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | U | 45 | G | 46 | C | 48 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHW | cWW | cWW | cWW | ||||
| 2 | J4_9MTS_014 | 9MTS | 0.3622 | 0 | 1x | tRNA | U | 7 | 4SU | 8 | A | 9 | A | 10 | * | U | 25 | A | 26 | G | 27 | * | U | 43 | C | 44 | U | 45 | A | 46 | G | 48 | U | 49 | * | A | 65 | A | 66 | cWW | cSs | cWW | cHW | cWW | cWW | ||||
| 3 | J4_1U0B_001 | 1U0B | 0.0000 | 0 | tRNA junction | A | tRNA | U | 7 | U | 8 | A | 9 | A | 10 | * | U | 25 | A | 26 | G | 27 | * | U | 43 | C | 44 | U | 45 | A | 46 | G | 48 | U | 49 | * | A | 65 | A | 66 | cWW | cSs | cWW | cHW | ncWB | cWW | cWW | ||
| 4 | J4_2IY5_001 | 2IY5 | 0.4697 | 1 | T | tRNA | G | 7 | U | 8 | A | 9 | G | 10 | * | C | 25 | A | 26 | U | 27 | * | A | 43 | G | 44 | U | 45 | G | 46 | C | 48 | C | 49 | * | G | 65 | C | 66 | cWW | cWW | ncHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAG*CAC*GGUGUCG*CC | 1 |
| U(4SU)AA*UAG*UCUAGU*AA | 1 |
| UUAA*UAG*UCUAGU*AA | 1 |
| GUAG*CAU*AGUGUCC*GC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*A*GUGUC* | 2 |
| (4SU)A*A*CUAG* | 1 |
| UA*A*CUAG* | 1 |
- Annotations
-
- (3)
- tRNA junction (1)
- Basepair signature
- cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
- Heat map statistics
- Min 0.36 | Avg 0.36 | Max 0.55
Coloring options: