Motif J4_42695.1 Version J4_42695.1 of this group appears in releases 3.2 to 3.9
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 1-14 | 2-3 | 6-7 | 8-14 | 10-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_3F2X_002 | 3F2X | 0.0000 | 1 | FMN riboswitch junction | X | FMN riboswitch (RFN element) | G | 32 | G | 33 | * | C | 46 | G | 47 | A | 48 | A | 49 | * | U | 60 | G | 62 | A | 63 | U | 64 | * | A | 80 | A | 81 | C | 82 | C | 83 | cWW | cWW | ncWW | ncsS | cWW |
| 2 | J4_3F4H_002 | 3F4H | 0.2671 | 1 | FMN riboswitch junction | X+Y | FMN riboswitch | G | 32 | G | 33 | * | C | 46 | G | 47 | A | 48 | A | 49 | * | U | 60 | G | 62 | A | 63 | U | 64 | * | A | 80 | A | 81 | C | 82 | C | 83 | cWW | cWW | cWW | ncsS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*CGAA*UUGAU*AACC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GA*UGA*AC | 2 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 |
|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- FMN riboswitch junction (2)
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWW-F-F
- Heat map statistics
- Min 0.27 | Avg 0.13 | Max 0.27
Coloring options: