Motif J4_58832.1 Version J4_58832.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8JY0_001 | 8JY0 | 0.7979 | 0 | B | RhoBAST | U | 7 | C | 8 | * | G | 29 | U | 30 | * | A | 36 | G | 37 | * | C | 58 | A | 59 | cWW | cWW | cWW | cWW | |
| 2 | J4_9DXL_001 | 9DXL | 0.7440 | 0 | A | RhoBAST aptamer | U | 5 | C | 6 | * | G | 13 | U | 14 | * | A | 20 | G | 21 | * | C | 42 | A | 43 | cWW | cWW | cWW | cWW | |
| 3 | J4_8VM9_002 | 8VM9 | 0.4236 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 8 | C | 9 | * | G | 30 | A | 31 | * | U | 41 | G | 42 | * | C | 77 | C | 78 | cWW | cWW | cWW | cWW | |
| 4 | J4_8VM8_001 | 8VM8 | 0.4170 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 10 | C | 11 | * | G | 35 | G | 36 | * | C | 46 | G | 47 | * | C | 83 | C | 84 | cWW | cWW | cWW | cWW | |
| 5 | J4_1NBS_002 | 1NBS | 0.3486 | 0 | RNase P junction | B | RNase P class B | G | 90 | C | 91 | * | G | 112 | G | 113 | * | C | 131 | G | 132 | * | C | 234 | C | 235 | cWW | cWW | cWW | cWW |
| 6 | J4_8VMA_001 | 8VMA | 0.0000 | 0 | C | Enterovirus 5' cloverleaf cis-acting replication element | G | 8 | G | 9 | * | C | 33 | A | 34 | * | U | 44 | G | 45 | * | C | 80 | C | 81 | cWW | cWW | cWW | cWW | |
| 7 | J4_7VYX_003 | 7VYX | 0.3167 | 0 | C | sgRNA | C | 6 | U | 7 | * | A | 59 | C | 60 | * | G | 82 | C | 83 | * | G | 103 | G | 104 | ncWW | cWW | cWW | cWW | |
| 8 | J4_1M5K_001 | 1M5K | 0.3235 | 0 | B+A | RNA HAIRPIN RIBOZYME | U | 84 | G | 85 | * | C | 7 | U | 8 | * | A | 14 | A | 15 | * | U | 68 | A | 69 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UC*GU*AG*CA | 2 |
| GC*GG*CG*CC | 2 |
| GC*GA*UG*CC | 1 |
| GG*CA*UG*CC | 1 |
| CU*AC*GC*GG | 1 |
| CU*AA*UA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *** | 8 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- RNase P junction (1)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.24 | Avg 0.53 | Max 0.99
Coloring options: