Motif J4_59590.2 Version J4_59590.2 of this group appears in releases 4.7 to 4.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8		9	break		10		11		12	break		13		14		15	1-15	3-6	3-8	4-5	7-11	9-10	12-13
1	J4_8GLP_012	8GLP	0.2160	1	L5	LSU rRNA	C	4231	U	4232	A	4233	G	4235	*	U	4289	U	4290	G	4291	A	4292	PSU	4293	*	A	4317	C	4318	C	4319	*	G	4328	G	4329	G	4330	cWW	tWW	tHH	cWW	cWW	cWW	cWW
2	J4_9H3G_010	9H3G	0.1155	1	A	LSU rRNA	C	2653	U	2654	A	2655	G	2657	*	U	2711	U	2712	G	2713	A	2714	U	2715	*	A	2739	C	2740	C	2741	*	G	2750	U	2751	G	2752	cWW	tWW	tHH	cWW	cWW	cWW	cWW
3	J4_8OI5_008	8OI5	0.0711	1	1	LSU rRNA	C	2626	U	2627	A	2628	G	2630	*	U	2684	U	2685	G	2686	A	2687	U	2688	*	A	2712	C	2713	C	2714	*	G	2723	U	2724	G	2725	cWW	tWW	ntHH	cWW	ncHW	cWW	cWW
4	J4_8P9A_019	8P9A	0.0000	1	AR	LSU rRNA	C	2654	U	2655	A	2656	G	2658	*	U	2712	U	2713	G	2714	A	2715	U	2716	*	A	2740	C	2741	C	2742	*	G	2751	U	2752	G	2753	cWW	tWW	tHH	cWW	ncHW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAGUUGAUACC*GUG	3
CUAAGUUGAPSUACC*GGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAAUGAC*U	3
UAAUGAC*G	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
Heat map statistics: Min 0.07 | Avg 0.12 | Max 0.22

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Coloring options: Nucleotide numbers

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