J4_8P9A_019

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

8P9A|1|AR|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8P9A|1|AR|C|2654
8P9A|1|AR|U|2655
8P9A|1|AR|A|2656
8P9A|1|AR|A|2657
8P9A|1|AR|G|2658
*
8P9A|1|AR|U|2712
8P9A|1|AR|U|2713
8P9A|1|AR|G|2714
8P9A|1|AR|A|2715
8P9A|1|AR|U|2716
*
8P9A|1|AR|A|2740
8P9A|1|AR|C|2741
8P9A|1|AR|C|2742
*
8P9A|1|AR|G|2751
8P9A|1|AR|U|2752
8P9A|1|AR|G|2753

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L5

Chain CV

60S ribosomal protein L21-A

Chain DD

60S ribosomal protein L29

Chain DQ

60S ribosomal protein L42-A

Chain sM

Suppressor protein STM1