Motif J4_61885.1 Version J4_61885.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | break | 20 | 21 | 1-21 | 2-3 | 5-12 | 7-10 | 8-9 | 11-12 | 19-20 | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4V88_024 | 4V88 | 0.1107 | 2 | A6 | SSU rRNA | A | 622 | G | 624 | * | C | 975 | G | 976 | A | 977 | A | 978 | A | 979 | G | 980 | * | C | 1021 | C | 1022 | A | 1023 | U | 1024 | A | 1025 | A | 1027 | C | 1028 | U | 1029 | A | 1030 | U | 1031 | G | 1032 | * | U | 1103 | U | 1104 | cWW | cWW | tHW | ncWW | cWW | cWW | |
| 2 | J4_5J7L_003 | 5J7L | 0.0000 | 2 | AA | SSU rRNA | G | 575 | G | 577 | * | C | 764 | G | 765 | A | 766 | A | 767 | A | 768 | G | 769 | * | C | 810 | C | 811 | G | 812 | U | 813 | A | 814 | A | 816 | C | 817 | G | 818 | A | 819 | U | 820 | G | 821 | * | C | 879 | C | 880 | cWW | cWW | tHW | ncWW | cWW | ncSH | cWW |
| 3 | J4_4LFB_003 | 4LFB | 0.0853 | 2 | A | SSU rRNA | G | 575 | G | 577 | * | C | 764 | G | 765 | A | 766 | A | 767 | A | 768 | G | 769 | * | C | 810 | C | 811 | C | 812 | U | 813 | A | 814 | A | 816 | C | 817 | G | 818 | A | 819 | U | 820 | G | 821 | * | C | 879 | C | 880 | cWW | cWW | tHW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAG*CGAAAG*CCAUAAACUAUG*UU | 1 |
| GCG*CGAAAG*CCGUAAACGAUG*CC | 1 |
| GGG*CGAAAG*CCCUAAACGAUG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GAAA*CAUAAACUAU* | 1 |
| C*GAAA*CGUAAACGAU* | 1 |
| G*GAAA*CCUAAACGAU* | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-tWH-F-F-F-cWW-F-F-cWW-F-F-cWW
- Heat map statistics
- Min 0.09 | Avg 0.07 | Max 0.13
Coloring options: