Motif J4_64571.1 Version J4_64571.1 of this group appears in releases 3.3 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 3-6 | 4-5 | 6-7 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4Y4O_016 | 4Y4O | 0.1180 | 4 | 2A | LSU rRNA | C | 1270 | A | 1274 | A | 1275 | A | 1276 | * | U | 1294 | C | 1295 | * | G | 1645 | C | 1646 | C | 1648 | * | G | 2009 | G | 2010 | cWW | ntSs | cWW | cWW | cWW |
| 2 | J4_5J7L_021 | 5J7L | 0.1051 | 4 | DA | LSU rRNA | C | 1270 | A | 1274 | A | 1275 | A | 1276 | * | U | 1294 | C | 1295 | * | G | 1645 | C | 1646 | U | 1648 | * | A | 2009 | G | 2010 | cWW | ntSs | cWW | cWW | cWW |
| 3 | J4_4IOA_003 | 4IOA | 0.0000 | 4 | X | LSU rRNA | C | 1283 | A | 1287 | A | 1288 | A | 1289 | * | U | 1307 | C | 1308 | * | G | 1662 | C | 1663 | C | 1665 | * | G | 1992 | G | 1993 | cWW | tSs | cWW | cWW | cWW |
| 4 | J4_4WF9_004 | 4WF9 | 0.4367 | 3 | X | LSU rRNA | C | 1308 | A | 1311 | A | 1312 | G | 1313 | * | C | 1331 | C | 1332 | * | G | 1689 | A | 1690 | C | 1692 | * | G | 2036 | G | 2037 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAUAAA*UC*GCGC*GG | 2 |
| CGAUAAA*UC*GCUU*AG | 1 |
| CGAAAG*CC*GAGC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAA**CG* | 2 |
| GAUAA**CU* | 1 |
| GAAA**AG* | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Heat map statistics
- Min 0.11 | Avg 0.21 | Max 0.45
Coloring options: