RNA 3D Hub //

4-way Junction Loop Motif Atlas Release 3.22

Polymorphs
#Varna 2DMotifCore NtsInstances
1
  • J4_70449.5
J4_70449.5
  • Basepair signature: cWW-F-cWW-cWW-cHS-F-cWW-cWW
  • History status: Updated, 1 parent
  • tRNA junction (36)
    		• 1336
    2
    • J4_07491.1
    		J4_07491.1
    • Basepair signature: cWW-F-F-tWS-F-F-cWW-cWW-cWW
    • History status: Exact match
  • Purine riboswitch junction (9)
    		• 139
    3
    • J4_72305.3
    		J4_72305.3
    • Basepair signature: cWW-F-cWW-cWW-cHS-F-cWW
    • History status: Exact match
  • tRNA junction (4)
    		• 116
    4
    • J4_69051.1
    		J4_69051.1
    • Basepair signature: cWW-F-cWW-F-F-tWH-F-F-F-cWW-cWW-cWW-F-F
    • History status: Exact match
    		206
    5
    • J4_04930.1
    		J4_04930.1
    • Basepair signature: cWW-tWW-cHW-F-F-cWW-cWW-F-cWW
    • History status: Exact match
    		156
    6
    • J4_45801.1
    		J4_45801.1
    • Basepair signature: cWW-tSH-tHW-cSH-cSS-tHH-F-F-cWW-cWW-cWW-F
    • History status: Exact match
    		195
    7
    • J4_36296.1
    		J4_36296.1
    • Basepair signature: cWW-F-F-F-cWW-cWW-F-cWW
    • History status: Exact match
  • tRNA junction (5)
    		• 125
    8
    • J4_10313.1
    		J4_10313.1
    • Basepair signature: cWW-F-cWW-F-F-tWH-F-F-F-cWW-cWW
    • History status: Exact match
    		165
    9
    • J4_71729.1
    		J4_71729.1
    • Basepair signature: cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
    • History status: Exact match
    		174
    10
    • J4_61477.1
    		J4_61477.1
    • Basepair signature: cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
    • History status: Exact match
    		194
    11
    • J4_61885.2
    		J4_61885.2
    • Basepair signature: cWW-F-cWW-cWW-F-F-F-tHW-F-F-F-F-F-cWW-F-F-F
    • History status: Exact match
    		224
    12
    • J4_64075.1
    		J4_64075.1
    • Basepair signature: cWW-tWW-cWW-F-F-cHW-F-cWW-tSS-cSS-cSH-tWH-tHS-cWW
    • History status: Exact match
    		204
    13
    • J4_64571.1
    		J4_64571.1
    • Basepair signature: cWW-F-cWW-tSS-cWW-F-cWW
    • History status: Exact match
    		114
    14
    • J4_78628.1
    		J4_78628.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
    		84
    15
    • J4_40439.1
    		J4_40439.1
    • Basepair signature: cWW-F-cWW-F-F-F-cWW-F-cWW
    • History status: Exact match
  • SAM-I riboswitch junction (4)
    		• 134
    16
    • J4_16596.1
    		J4_16596.1
    • Basepair signature: cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F
    • History status: Exact match
  • Cobalamin riboswitch junction (3)
    		• 173
    17
    • J4_35578.2
    		J4_35578.2
    • Basepair signature: cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
    • History status: Exact match
    		153
    18
    • J4_77044.1
    		J4_77044.1
    • Basepair signature: cWW-cWW-F-cWW-tHS-cWW-F-F-cWW
    • History status: Exact match
    		153
    19
    • J4_70672.1
    		J4_70672.1
    • Basepair signature: cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F
    • History status: Exact match
  • FMN riboswitch junction (1)
    		• 242
    20
    • J4_91882.1
    		J4_91882.1
    • Basepair signature: cWW-F-F-F-cWW-F-cWW-cWW
    • History status: Exact match
  • tRNA junction (2)
    		• 162
    21
    • J4_10408.3
    		J4_10408.3
    • Basepair signature: cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
    • History status: Exact match
    		182
    22
    • J4_60168.1
    		J4_60168.1
    • Basepair signature: cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
    • History status: Exact match
    		202
    23
    • J4_94519.1
    		J4_94519.1
    • Basepair signature: cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
    • History status: Exact match
  • tRNA junction (2)
    		• 172
    24
    • J4_34476.1
    		J4_34476.1
    • Basepair signature: cWW-F-F-F-F-tWS-tHS-F-cWW-cWW-F-F-tHS-cWW
    • History status: Exact match
    		212
    25
    • J4_63076.1
    		J4_63076.1
    • Basepair signature: cWW-tSS-cWW-cWW-cWW
    • History status: Exact match
  • class I ligase product junction (2)
    		• 92
    26
    • J4_48907.1
    		J4_48907.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • RNase P junction (2)
    		• 82
    27
    • J4_65285.1
    		J4_65285.1
    • Basepair signature: cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
    • History status: Exact match
  • tRNA junction (2)
    		• 152
    28
    • J4_36540.1
    		J4_36540.1
    • Basepair signature: cWW-cWW-F-F-F-cWW-F-cWW-F-F
    • History status: Exact match
  • FMN riboswitch junction (1)
    		• 152
    29
    • J4_22413.1
    		J4_22413.1
    • Basepair signature: cWW-F-F-F-cWW-F-cWW-F-cWW
    • History status: Exact match
  • tRNA junction (2)
    		• 152
    30
    • J4_36568.1
    		J4_36568.1
    • Basepair signature: cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F
    • History status: Exact match
    		172
    31
    • J4_80682.1
    		J4_80682.1
    • Basepair signature: cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
    • History status: Exact match
  • tRNA junction (2)
    		• 182
    32
    • J4_59845.1
    		J4_59845.1
    • Basepair signature: cWW-tSW-F-cWW-F-F-cWW-F-F-cWW-F-F
    • History status: Exact match
    		172
    33
    • J4_26796.1
    		J4_26796.1
    • Basepair signature: cWW-cSH-cWW-F-F-F-tHW-F-cWW-F-F-F-cWW
    • History status: Exact match
    		181
    34
    • J4_28426.1
    		J4_28426.1
    • Basepair signature: cWW-F-cWW-F-F-F-F-F-cWW-cWW
    • History status: Exact match
  • SAM-I/IV riboswitch junction (1)
    		• 141
    35
    • J4_46448.1
    		J4_46448.1
    • Basepair signature: cWW-cWS-tSH-cWW-cWW-cWW
    • History status: Exact match
    		111
    36
    • J4_10571.1
    		J4_10571.1
    • Basepair signature: cWW-F-F-F-cWW-F-F-cWW-F
    • History status: Exact match
    		121
    37
    • J4_28473.1
    		J4_28473.1
    • Basepair signature: cWW-F-F-F-cWW-cWW-F-cWW-F
    • History status: Exact match
    		131
    38
    • J4_47478.1
    		J4_47478.1
    • Basepair signature: cWW-F-cWW-cWS-cHW-cWW-cWW
    • History status: Exact match
    		111
    39
    • J4_99897.1
    		J4_99897.1
    • Basepair signature: cWW-F-cWW-cWW-cWW-cWW-F-cWW
    • History status: Exact match
    		141
    40
    • J4_11418.1
    		J4_11418.1
    • Basepair signature: cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
    • History status: Exact match
    		191
    41
    • J4_75852.1
    		J4_75852.1
    • Basepair signature: cWW-tSW-cSS-cWW-F-cSH-cWW-cWW-F-F
    • History status: Exact match
    		161
    42
    • J4_48692.1
    		J4_48692.1
    • Basepair signature: cWW-tHW-F-F-cWW-cWW-cWW
    • History status: Exact match
    		121
    43
    • J4_12209.1
    		J4_12209.1
    • Basepair signature: cWW-F-F-F-cWW-tWH-F-cWW-F-F-F-tWS-tWH-F-F-F-F-F-cSH-cWW-F
    • History status: Exact match
  • RNase P junction (1)
    		• 271
    44
    • J4_35200.1
    		J4_35200.1
    • Basepair signature: cWW-F-cWW-cWW-cWW-F
    • History status: Exact match
  • RNase P junction (1)
    		• 101
    45
    • J4_75971.1
    		J4_75971.1
    • Basepair signature: cWW-tSS-cWW-cWW-cWW-cWW
    • History status: Exact match
    		111
    46
    • J4_76405.1
    		J4_76405.1
    • Basepair signature: cWW-F-F-F-cWW-F-cWW-cWW-F
    • History status: Exact match
    		131
    47
    • J4_50097.1
    		J4_50097.1
    • Basepair signature: cWW-tSH-F-tHS-F-F-cWW-cWW-cWW
    • History status: Exact match
    		151
    48
    • J4_19572.1
    		J4_19572.1
    • Basepair signature: cWW-F-cSW-F-F-tWH-cWW-F-cHW-F-cWW-F-tWS-F-cWW-F-F-F-cSH-tWH-cWW-F-F-F
    • History status: Exact match
  • RNase P junction (1)
    		• 311
    49
    • J4_01665.1
    		J4_01665.1
    • Basepair signature: cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
    • History status: Exact match
    		181
    50
    • J4_51403.1
    		J4_51403.1
    • Basepair signature: cWW-cHH-tSH-F-cWW-F-cWW-cSS-cWW-F-cWW
    • History status: Exact match
    		181
    51
    • J4_20770.1
    		J4_20770.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-cWW-F-F-F-F-F-F-tSS-F-cWW-cWW-F
    • History status: Exact match
    		251
    52
    • J4_04237.1
    		J4_04237.1
    • Basepair signature: cWW-F-F-F-cWH-F-F-F-F-cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		291
    53
    • J4_57327.1
    		J4_57327.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-cWW-F-cWW-F-F-F
    • History status: Exact match
    		181
    54
    • J4_80169.1
    		J4_80169.1
    • Basepair signature: cWW-cWW-F-cWW-tHS-cWW-F-cWW-F-cWW
    • History status: Exact match
    		171
    55
    • J4_57344.1
    		J4_57344.1
    • Basepair signature: cWW-F-cWW-F-cWW-cSH-cWW
    • History status: Exact match
    		111
    56
    • J4_24220.1
    		J4_24220.1
    • Basepair signature: cWW-F-F-tWS-F-F-cWW-tHS-cWW-cWW
    • History status: Exact match
    		151
    57
    • J4_69568.1
    		J4_69568.1
    • Basepair signature: cWW-F-cWW-F-cWW-F-F-cWW
    • History status: Exact match
    		121
    58
    • J4_59634.1
    		J4_59634.1
    • Basepair signature: cWW-F-F-F-cHS-F-F-F-F-F-F-F-F
    • History status: Exact match
    		151
    59
    • J4_26776.1
    		J4_26776.1
    • Basepair signature: cWW-tSH-F-cWW-cWW-F-tHS-cWW
    • History status: Exact match
    		141
    60
    • J4_45582.1
    		J4_45582.1
    • Basepair signature: cWW-F-cWW-cWW-cWW-cWW
    • History status: Exact match
    		111
    61
    • J4_89787.1
    		J4_89787.1
    • Basepair signature: cWW-F-cWW-F-F-F-F-F-F-F-cWW-cWW
    • History status: Exact match
    		161

    Coloring options:


    Exact match 60; Updated, 1 parent 1;

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