Motif J4_80390.1 Version J4_80390.1 of this group appears in releases 3.98 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 2-3 | 4-7 | 5-6 | 8-9 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_2AKE_003 | 2AKE | 0.0000 | 4 | tRNA junction | B | tRNA | G | 7 | G | 10 | * | C | 25 | G | 26 | U | 27 | * | A | 43 | A | 44 | U | 47 | U | 48 | G | 49 | * | U | 65 | C | 66 | cWW | cWW | ncWW | ncWW | ncSH | cWW |
| 2 | J4_2ZZN_002 | 2ZZN | 0.8881 | 4 | D | RNA (71-MER) | G | 7 | G | 10 | * | C | 25 | A | 26 | G | 27 | * | C | 43 | C | 44 | A | 47 | C | 48 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGG*CGU*AAGGUUG*UC | 1 |
| GUAG*CAG*CCUUACG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*G*AGGUU* | 1 |
| UA*A*CUUAC* | 1 |
Release history
| Release | 3.98 |
|---|---|
| Date | 2025-06-18 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA junction (1)
- (1)
- Basepair signature
- cWW-cWW-cWW-F-F-cWW-F-F
- Heat map statistics
- Min 0.89 | Avg 0.44 | Max 0.89
Coloring options: