Motif J4_80477.1 Version J4_80477.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 1-12 | 2-11 | 3-4 | 5-6 | 7-8 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_2AKE_003 | 2AKE | 0.0000 | 4 | tRNA junction | B | tRNA | A | 43 | A | 44 | U | 47 | U | 48 | G | 49 | * | U | 65 | C | 66 | * | G | 7 | G | 10 | * | C | 25 | G | 26 | U | 27 | ncWW | ncWW | ncSH | cWW | cWW | cWW |
| 2 | J4_1U0B_001 | 1U0B | 0.6989 | 3 | tRNA junction | A | tRNA | U | 43 | C | 44 | A | 46 | G | 48 | U | 49 | * | A | 65 | A | 66 | * | U | 7 | A | 10 | * | U | 25 | A | 26 | G | 27 | cWW | ncBW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGG*CGU*AAGGUUG*UC | 1 |
| UUAA*UAG*UCUAGU*AA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*G*AGGUU* | 1 |
| UA*A*CUAG* | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-02-09 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA junction (2)
- Basepair signature
- cWW-F-F-F-cWW-F-cWW-cWW
- Heat map statistics
- Min 0.70 | Avg 0.35 | Max 0.70
Coloring options: