Motif J4_97085.2 Version J4_97085.2 of this group appears in releases 3.94 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-13 | 2-3 | 4-7 | 5-6 | 8-12 | 9-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8YDC_001 | 8YDC | 0.3033 | 0 | A+B | RAGATH-1 hammerhead ribozyme + DNA/RNA (5'-R(*AP*CP*AP*UP*GP*UP*CP*U)-D(P*C)-R(P*UP*GP*GP*GP*A)-3') | A | 28 | C | 29 | * | G | 34 | A | 35 | G | 36 | * | C | 43 | G | 44 | A | 45 | A | 46 | A | 47 | * | U | 8 | DC | 9 | U | 10 | cWW | cWW | ntHS | cWW | cWW | ||
| 2 | J4_2OEU_001 | 2OEU | 0.0000 | 0 | A+B | Hammerhead Ribozyme + RNA (20-mer) | G | 14 | C | 15 | * | G | 20 | A | 21 | G | 22 | * | C | 35 | G | 36 | A | 37 | A | 38 | A | 39 | * | U | 5 | OMC | 6 | C | 7 | cWW | cWW | tHS | cWW | ncWW | cWW | |
| 3 | J4_8SYK_001 | 8SYK | 0.3157 | 0 | A | RNA device 43 truncation mutant 3 (U100C) | G | 21 | C | 22 | * | G | 27 | A | 28 | G | 29 | * | C | 42 | A | 43 | A | 44 | A | 45 | A | 46 | * | U | 102 | C | 103 | C | 104 | cWW | cWW | ntHS | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AC*GAG*CGAAA*U(DC)U | 1 |
| GC*GAG*CGAAA*U(OMC)C | 1 |
| GC*GAG*CAAAA*UCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A*GAA*(DC) | 1 |
| *A*GAA*(OMC) | 1 |
| *A*AAA*C | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-F-cWW-tHS-cWW-F-F
- Heat map statistics
- Min 0.30 | Avg 0.21 | Max 0.32
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