Motif J5_00273.1 Version J5_00273.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | break | 23 | 24 | 25 | 26 | 1-26 | 4-5 | 6-20 | 7-21 | 8-9 | 10-18 | 11-19 | 12-17 | 13-16 | 14-15 | 20-25 | 22-23 | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4LFB_001 | 4LFB | 0.0000 | 0 | A | SSU rRNA | C | 36 | U | 37 | G | 38 | G | 39 | * | C | 403 | U | 404 | U | 405 | G | 406 | * | C | 436 | U | 437 | G | 438 | A | 439 | A | 440 | C | 442 | * | G | 492 | G | 494 | U | 495 | A | 496 | A | 497 | U | 498 | A | 499 | G | 500 | * | C | 545 | G | 546 | A | 547 | G | 548 | cWW | cWW | cWH | cWH | cWW | tWH | tSH | tHW | tHS | cWW | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*UU*UGAA*GUAAUA*GA | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-tSH-tWH-tHW-tHS-tWH-cHW-cWW-cHW-cWW-F-cWW-cWW-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: