Motif J5_02492.2 Version J5_02492.2 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | break | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | break | 32 | 33 | 34 | 35 | 1-35 | 5-6 | 9-30 | 10-15 | 11-14 | 11-24 | 12-13 | 15-24 | 16-26 | 17-23 | 18-28 | 19-22 | 20-21 | 31-32 | |||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8GLP_007 | 8GLP | 0.0912 | 0 | S2 | SSU rRNA | C | 30 | U | 31 | U | 32 | G | 33 | PSU | 34 | * | A | 521 | A | 522 | A | 523 | U | 524 | A | 525 | A | 526 | C | 527 | * | G | 558 | G | 559 | A | 560 | A | 561 | U | 562 | G | 563 | A | 564 | G | 565 | * | C | 585 | G | 586 | A | 587 | G | 588 | G | 589 | A2M | 590 | U | 591 | C | 592 | C | 593 | A | 594 | U | 595 | * | A | 641 | U | 642 | A | 643 | OMG | 644 | cWW | cWW | cWH | cwW | cWW | ncHH | cWW | ntHH | ntWH | ntWH | cWW | tHS | cWW | cWW |
| 2 | J5_8CRE_019 | 8CRE | 0.0000 | 0 | CM | SSU rRNA | C | 31 | U | 32 | U | 33 | G | 34 | U | 35 | * | A | 471 | A | 472 | A | 473 | U | 474 | A | 475 | A | 476 | C | 477 | * | G | 507 | G | 508 | A | 509 | A | 510 | U | 511 | G | 512 | A | 513 | G | 514 | * | C | 534 | G | 535 | A | 536 | G | 537 | G | 538 | A | 539 | A | 540 | C | 541 | A | 542 | A | 543 | U | 544 | * | A | 590 | A | 591 | A | 592 | G | 593 | cWW | cWW | cWH | cwW | cWW | ncHH | cWW | ntHH | ntWH | tWH | cWW | tHS | cWW | cWW |
| 3 | J5_8P9A_016 | 8P9A | 0.4708 | 0 | sR | SSU rRNA | C | 31 | U | 32 | U | 33 | G | 34 | U | 35 | * | A | 473 | A | 474 | A | 475 | U | 476 | A | 477 | A | 478 | C | 479 | * | G | 509 | G | 510 | A | 511 | A | 512 | U | 513 | G | 514 | A | 515 | G | 516 | * | C | 536 | G | 537 | A | 538 | G | 539 | G | 540 | A | 541 | A | 542 | C | 543 | A | 544 | A | 545 | U | 546 | * | A | 592 | U | 593 | A | 594 | G | 595 | cWW | cWW | cWH | cwW | cWW | cWW | ncHH | ncWW | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUGPSU*AAAUAAC*GGAAUGAG*CGAGG(A2M)UCCAU*AUAOMG | 1 |
| CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AAAG | 1 |
| CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUG*AAUAA*GAAUGA*GAGG(A2M)UCCA*UA | 1 |
| UUG*AAUAA*GAAUGA*GAGGAACAA*AA | 1 |
| UUG*AAUAA*GAAUGA*GAGGAACAA*UA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-F-F-cWW-F-cWW-F-cWW-F-cWW-F-tWH-tHS-cWW-F
- Heat map statistics
- Min 0.09 | Avg 0.23 | Max 0.48
Coloring options: