Motif J5_04415.1 Version J5_04415.1 of this group appears in releases 3.80 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | break | 18 | 19 | break | 20 | 21 | 22 | 23 | 24 | 25 | break | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 1-32 | 2-30 | 2-31 | 3-30 | 5-17 | 6-23 | 7-11 | 8-9 | 10-23 | 17-18 | 19-20 | 22-28 | 25-26 | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8C3A_025 | 8C3A | 0.0000 | 10 | CM | SSU rRNA | A | 124 | U | 125 | A | 126 | G | 127 | A | 129 | U | 136 | A | 137 | U | 140 | * | A | 171 | U | 172 | G | 173 | C | 174 | U | 175 | A | 177 | A | 178 | A | 179 | A | 180 | * | U | 201 | G | 202 | * | C | 261 | G | 262 | A | 263 | A | 264 | U | 265 | C | 266 | * | G | 285 | A | 286 | U | 287 | G | 288 | G | 289 | U | 290 | U | 291 | cWW | ncWWa | cwW | tHS | tWW | ncHW | tWS | cWW | tWH | ncWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAGUACCUUACUACUU*AUGCUUAAAA*UG*CGAAUC*GAUGGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUACCUUACUACU*UGCUUAAA**GAAU*AUGGU | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-cWW-tHS-F-F-tWW-cWW-F-F-tWS-cWW-cWW-F-tWH-F-F-F-cWW-F-F-cWW-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: