Loop J5_8C3A

3D structure

PDB id: 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å

Loop

Sequence: AUAGUACCUUACUACUU*AUGCUUAAAA*UG*CGAAUC*GAUGGUU
Length: 42 nucleotides
Bulged bases: 8C3A|1|CM|U|128, 8C3A|1|CM|C|130, 8C3A|1|CM|C|131, 8C3A|1|CM|U|132, 8C3A|1|CM|U|133, 8C3A|1|CM|A|134, 8C3A|1|CM|C|135, 8C3A|1|CM|C|138, 8C3A|1|CM|U|139, 8C3A|1|CM|U|176
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J5_04415.1
Basepair signature: cWW-cWW-tHS-F-F-tWW-cWW-F-F-tWS-cWW-cWW-F-tWH-F-F-F-cWW-F-F-cWW-F
Number of instances in this motif group: 1

Unit IDs

8C3A|1|CM|A|124
8C3A|1|CM|U|125
8C3A|1|CM|A|126
8C3A|1|CM|G|127
8C3A|1|CM|U|128
8C3A|1|CM|A|129
8C3A|1|CM|C|130
8C3A|1|CM|C|131
8C3A|1|CM|U|132
8C3A|1|CM|U|133
8C3A|1|CM|A|134
8C3A|1|CM|C|135
8C3A|1|CM|U|136
8C3A|1|CM|A|137
8C3A|1|CM|C|138
8C3A|1|CM|U|139
8C3A|1|CM|U|140
*
8C3A|1|CM|A|171
8C3A|1|CM|U|172
8C3A|1|CM|G|173
8C3A|1|CM|C|174
8C3A|1|CM|U|175
8C3A|1|CM|U|176
8C3A|1|CM|A|177
8C3A|1|CM|A|178
8C3A|1|CM|A|179
8C3A|1|CM|A|180
*
8C3A|1|CM|U|201
8C3A|1|CM|G|202
*
8C3A|1|CM|C|261
8C3A|1|CM|G|262
8C3A|1|CM|A|263
8C3A|1|CM|A|264
8C3A|1|CM|U|265
8C3A|1|CM|C|266
*
8C3A|1|CM|G|285
8C3A|1|CM|A|286
8C3A|1|CM|U|287
8C3A|1|CM|G|288
8C3A|1|CM|G|289
8C3A|1|CM|U|290
8C3A|1|CM|U|291

Current chains

Chain CM: 18S

Nearby chains

Chain CR: 40S ribosomal protein S4
Chain CT: 40S ribosomal protein S6
Chain CV: 40S ribosomal protein S8

J5_8C3A_025