Motif J5_08912.1 Version J5_08912.1 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | break | 12 | 13 | 14 | 1-14 | 2-3 | 3-4 | 4-13 | 5-14 | 7-8 | 9-10 | 11-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8P9A_015 | 8P9A | 0.0611 | 5 | AR | LSU rRNA | U | 2416 | U | 2417 | A | 2419 | * | U | 2611 | U | 2612 | U | 2613 | G | 2614 | * | C | 2627 | A | 2628 | * | U | 2650 | G | 2651 | * | C | 2798 | A | 2803 | A | 2804 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW |
| 2 | J5_8CRE_006 | 8CRE | 0.0000 | 5 | 1 | LSU rRNA | U | 2394 | U | 2395 | A | 2397 | * | U | 2583 | U | 2584 | U | 2585 | G | 2586 | * | C | 2599 | A | 2600 | * | U | 2622 | G | 2623 | * | C | 2770 | A | 2775 | A | 2776 | cWW | cWH | cWW | ntsS | cWH | cWW | cWW | cWW |
| 3 | J5_4V9F_008 | 4V9F | 0.2085 | 5 | 0 | LSU rRNA | U | 2115 | U | 2116 | A | 2118 | * | U | 2276 | U | 2277 | U | 2278 | G | 2279 | * | C | 2292 | G | 2293 | * | C | 2315 | G | 2316 | * | C | 2464 | A | 2469 | A | 2470 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGA*UUUG*CA*UG*CAGAAAA | 2 |
| UUUA*UUUG*CG*CG*CAGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*UU***AGAAA | 2 |
| UU*UU***AGAAA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Heat map statistics
- Min 0.06 | Avg 0.11 | Max 0.23
Coloring options: