Motif J5_13256.1 Version J5_13256.1 of this group appears in releases 3.75 to 3.83

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2	break		3		4		5	break		6		7		8	break		9		10		11	break		12		13	1-13	2-3	4-7	5-6	8-9	11-12
1	J5_3ZGZ_001	3ZGZ	0.0000	3	B	tRNA	A	7	G	10	*	C	25	A	26	A	27	*	U	43	C	44	G	45	*	U	47\|\|\|I	G	47\|\|\|J	G	49	*	C	65	U	66	cWW	cWW	cWW	cWW	cWW	cWW
2	J5_8JOZ_001	8JOZ	0.8057	2	B	tRNA	G	7	G	10	*	C	25	A	26	C	27	*	G	43	C	44	G	45	*	U	47\|\|\|K	C	48	C	49	*	G	65	C	66	cWW	cWW	cWW	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUGGCAAUCGUGUGCU	1
G(4SU)GGCACGCGUCCGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGACGU	1
(4SU)GACC	1

Release history

Release	3.75	3.76	3.77	3.78	3.79	3.80	3.81	3.82	3.83
Date	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Basepair signature: cWW-cWW-cWW-cWW-F-cWW-cWW
Heat map statistics: Min 0.81 | Avg 0.40 | Max 0.81

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