Motif J5_19320.1 Version J5_19320.1 of this group appears in releases 3.80 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | break | 19 | 20 | 21 | break | 22 | 23 | 24 | 25 | 1-25 | 5-6 | 9-20 | 10-15 | 11-14 | 12-13 | 18-19 | 21-22 | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8C3A_018 | 8C3A | 0.0000 | 1 | CM | SSU rRNA | C | 31 | U | 32 | U | 33 | G | 34 | U | 35 | * | A | 471 | A | 472 | A | 473 | U | 474 | A | 475 | A | 476 | C | 477 | * | G | 507 | G | 508 | A | 509 | A | 510 | U | 511 | G | 512 | * | C | 541 | A | 543 | U | 544 | * | A | 590 | A | 591 | A | 592 | G | 593 | cWW | cWW | cWH | cwW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUGU*AAAUAAC*GGAAUG*CAAU*AAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUG*AAUAA*GAAU*AA*AA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: