J5_8C3A_018

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AAAG

Length

26 nucleotides

Bulged bases

8C3A|1|CM|A|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8C3A|1|CM|C|31
8C3A|1|CM|U|32
8C3A|1|CM|U|33
8C3A|1|CM|G|34
8C3A|1|CM|U|35
*
8C3A|1|CM|A|471
8C3A|1|CM|A|472
8C3A|1|CM|A|473
8C3A|1|CM|U|474
8C3A|1|CM|A|475
8C3A|1|CM|A|476
8C3A|1|CM|C|477
*
8C3A|1|CM|G|507
8C3A|1|CM|G|508
8C3A|1|CM|A|509
8C3A|1|CM|A|510
8C3A|1|CM|U|511
8C3A|1|CM|G|512
*
8C3A|1|CM|C|541
8C3A|1|CM|A|542
8C3A|1|CM|A|543
8C3A|1|CM|U|544
*
8C3A|1|CM|A|590
8C3A|1|CM|A|591
8C3A|1|CM|A|592
8C3A|1|CM|G|593

Current chains

Chain CM

18S

Nearby chains

Chain CW

Ribosomal protein S4

Chain DK

Ribosomal protein S23 (S12)

Chain DR

40S ribosomal protein S30