Motif J5_20390.2 Version J5_20390.2 of this group appears in releases 3.99 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 2-3 | 4-7 | 5-6 | 8-9 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_3ZGZ_001 | 3ZGZ | 0.4173 | 3 | B | tRNA | A | 7 | G | 10 | * | C | 25 | A | 26 | A | 27 | * | U | 43 | C | 44 | G | 45 | * | U | 47|||I | G | 47|||J | G | 49 | * | C | 65 | U | 66 | cWW | cWW | cWW | cWW | cWW | cWW |
| 2 | J5_9J4O_001 | 9J4O | 0.0000 | 3 | A | tRNA | G | 7 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | C | 44 | G | 45 | * | C | 47|||k | G | 47|||l | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cWW | cWW | cWW | cWW |
| 3 | J5_8JOZ_001 | 8JOZ | 0.7328 | 2 | B | tRNA | G | 7 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | C | 44 | G | 45 | * | U | 47|||K | C | 48 | C | 49 | * | G | 65 | C | 66 | cWW | cWW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGG*CAA*UCG*UGUG*CU | 1 |
| GUGG*CAC*GCG*CGUG*CC | 1 |
| G(4SU)GG*CAC*GCG*UCC*GC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*A*C*GU* | 2 |
| (4SU)G*A*C*C* | 1 |
Release history
| Release | 3.99 |
|---|---|
| Date | 2025-07-16 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-cWW
- Heat map statistics
- Min 0.42 | Avg 0.43 | Max 0.81
Coloring options: