Motif J5_27349.1 Version J5_27349.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 20 | 21 | break | 22 | 23 | 24 | 25 | 26 | 27 | break | 28 | 29 | 30 | 31 | 32 | 1-32 | 5-12 | 6-11 | 6-16 | 7-8 | 8-10 | 9-12 | 11-16 | 13-19 | 14-15 | 20-31 | 21-22 | 26-30 | 27-28 | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_9DFE_006 | 9DFE | 0.0000 | 5 | 1A | LSU rRNA | A | 2057 | A | 2058 | A | 2059 | A | 2060 | G | 2061 | C | 2063 | C | 2064 | * | G | 2446 | G | 2447 | U | 2449 | A | 2450 | A | 2451 | C | 2452 | A | 2453 | * | U | 2500 | C | 2501 | G | 2502 | 2MA | 2503 | U | 2504 | G | 2505 | C | 2507 | * | G | 2582 | G | 2583 | U | 2584 | C | 2586 | A | 2587 | G | 2588 | * | C | 2606 | G | 2607 | G | 2608 | C | 2610 | U | 2611 | cWW | ncWW | cWW | ntWS | cWW | ntSW | tHH | tHW | cWW | cWW | tWW | cWW | tHS | cWW |
| 2 | J5_8B0X_008 | 8B0X | 0.3129 | 3 | a | LSU rRNA | G | 2061 | A | 2062 | A | 2063 | A | 2064 | G | 2065 | C | 2067 | C | 2068 | * | G | 2450 | G | 2451 | H2U | 2453 | A | 2454 | A | 2455 | C | 2456 | A | 2457 | * | U | 2504 | C | 2505 | G | 2506 | 2MA | 2507 | PSU | 2508 | G | 2509 | U | 2510 | * | G | 2587 | U | 2588 | U | 2589 | U | 2590 | A | 2591 | G | 2592 | * | C | 2610 | G | 2611 | G | 2612 | C | 2614 | C | 2615 | cWW | ncWW | cWW | ntWS | cWW | tHH | tHW | cWW | cWW | ntWW | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU | 1 |
| GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGAC*GAUAAC*CG(2MA)UGU*GUUCA*GGUC | 1 |
| AAAGAC*GA(H2U)AAC*CG(2MA)(PSU)G*UUUA*GGUC | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-tWW-F-tHS-F-F-F-cWW-cWW-cWW-F-tHH-F-F-F-tHW-cWW-cWW-cWW-F-F
- Heat map statistics
- Min 0.31 | Avg 0.16 | Max 0.31
Coloring options: