Motif J5_30741.1 Version J5_30741.1 of this group appears in releases 3.3 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | break | 21 | 22 | 23 | 24 | 25 | 26 | break | 27 | 28 | 29 | 30 | 31 | 1-31 | 5-11 | 6-10 | 6-15 | 7-8 | 9-11 | 10-15 | 12-18 | 13-14 | 19-30 | 20-21 | 25-29 | 26-27 | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4Y4O_016 | 4Y4O | 0.0000 | 6 | 2A | LSU rRNA | A | 2057 | A | 2058 | A | 2059 | A | 2060 | G | 2061 | C | 2063 | C | 2064 | * | G | 2446 | G | 2447 | A | 2450 | A | 2451 | C | 2452 | A | 2453 | * | U | 2500 | C | 2501 | G | 2502 | 2MA | 2503 | U | 2504 | G | 2505 | C | 2507 | * | G | 2582 | G | 2583 | U | 2584 | C | 2586 | A | 2587 | G | 2588 | * | C | 2606 | G | 2607 | G | 2608 | C | 2610 | U | 2611 | cWW | ncWW | cWW | ntWS | cWW | tHH | tHW | cWW | cWW | tWW | cWW | tHS | cWW |
| 2 | J5_4IOA_005 | 4IOA | 0.1300 | 6 | X | LSU rRNA | A | 2040 | A | 2041 | A | 2042 | A | 2043 | G | 2044 | C | 2046 | C | 2047 | * | G | 2425 | G | 2426 | A | 2429 | A | 2430 | C | 2431 | A | 2432 | * | U | 2479 | C | 2480 | G | 2481 | A | 2482 | U | 2483 | G | 2484 | C | 2486 | * | G | 2561 | G | 2562 | U | 2563 | C | 2565 | A | 2566 | G | 2567 | * | C | 2585 | G | 2586 | G | 2587 | C | 2589 | U | 2590 | cWW | cWW | cWW | cWW | ntHH | tHW | cWW | cWW | tWW | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU | 1 |
| AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGAC*GAUAAC*CG(2MA)UGU*GUUCA*GGUC | 1 |
| AAAGAC*GAUAAC*CGAUGU*GUUCA*GGUC | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tWH-cWW-F-tHH-cWW-F-cWW-F-tWW-F-cWW-cWW-F-F-F-F-F-tHS-F-cWW-cWW-F
- Heat map statistics
- Min 0.13 | Avg 0.06 | Max 0.13
Coloring options: