J5_4IOA_005
3D structure
- PDB id
- 4IOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 4IOA|1|X|A|2045, 4IOA|1|X|A|2427, 4IOA|1|X|U|2564, 4IOA|1|X|U|2588
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_30741.1
- Basepair signature
- cWW-tWH-cWW-F-tHH-cWW-F-cWW-F-tWW-F-cWW-cWW-F-F-F-F-F-tHS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4IOA|1|X|A|2040
4IOA|1|X|A|2041
4IOA|1|X|A|2042
4IOA|1|X|A|2043
4IOA|1|X|G|2044
4IOA|1|X|A|2045
4IOA|1|X|C|2046
4IOA|1|X|C|2047
*
4IOA|1|X|G|2425
4IOA|1|X|G|2426
4IOA|1|X|A|2427
4IOA|1|X|U|2428
4IOA|1|X|A|2429
4IOA|1|X|A|2430
4IOA|1|X|C|2431
4IOA|1|X|A|2432
*
4IOA|1|X|U|2479
4IOA|1|X|C|2480
4IOA|1|X|G|2481
4IOA|1|X|A|2482
4IOA|1|X|U|2483
4IOA|1|X|G|2484
4IOA|1|X|U|2485
4IOA|1|X|C|2486
*
4IOA|1|X|G|2561
4IOA|1|X|G|2562
4IOA|1|X|U|2563
4IOA|1|X|U|2564
4IOA|1|X|C|2565
4IOA|1|X|A|2566
4IOA|1|X|G|2567
*
4IOA|1|X|C|2585
4IOA|1|X|G|2586
4IOA|1|X|G|2587
4IOA|1|X|U|2588
4IOA|1|X|C|2589
4IOA|1|X|U|2590
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain B
- 50S ribosomal protein L3
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain P
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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