Motif J5_35246.1 Version J5_35246.1 of this group appears in releases 3.3 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | break | 16 | 17 | 18 | break | 19 | 20 | 21 | 1-5 | 1-21 | 2-3 | 3-12 | 4-10 | 4-12 | 5-11 | 5-21 | 6-9 | 7-8 | 13-14 | 15-16 | 17-20 | 18-19 | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4Y4O_010 | 4Y4O | 0.0777 | 1 | 2A | LSU rRNA | C | 47 | G | 48 | A | 49 | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 116 | G | 117 | A | 118 | A | 119 | U | 120 | G | 121 | * | C | 130 | G | 131 | * | C | 148 | A | 149 | C | 150 | * | G | 176 | G | 177 | G | 178 | ncsS | cWW | ncSs | cHW | tSH | tHH | tHS | cWW | cWW | cWW | cWW | |||
| 2 | J5_5J7L_013 | 5J7L | 0.0000 | 1 | DA | LSU rRNA | C | 47 | G | 48 | A | 49 | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 116 | G | 117 | A | 118 | A | 119 | U | 120 | G | 121 | * | C | 130 | A | 131 | * | U | 148 | A | 149 | U | 150 | * | A | 176 | G | 177 | G | 178 | ncsS | cWW | ncSs | cHW | tSH | tHH | tHS | cWW | cWW | cWW | cWW | |||
| 3 | J5_4WF9_001 | 4WF9 | 0.1026 | 1 | X | LSU rRNA | C | 47 | A | 48 | A | 49 | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 115 | G | 116 | A | 117 | A | 118 | U | 119 | G | 120 | * | C | 129 | A | 130 | * | U | 149 | A | 150 | U | 151 | * | A | 178 | A | 179 | G | 180 | ncsS | cWW | tSH | ntHH | tSs | tHS | cWW | cWW | cWW | ncWw | ncWW | |||
| 4 | J5_5TBW_001 | 5TBW | 0.2355 | 1 | 4+1 | 5.8S rRNA | C | 35 | G | 36 | A | 37 | G | 39 | A | 40 | A | 41 | G | 42 | * | U | 102 | G | 103 | A | 104 | A | 105 | C | 106 | G | 107 | * | C | 115 | G | 116 | * | C | 137 | A | 138 | U | 139 | * | A | 20 | G | 21 | G | 22 | ncsS | cWW | tSH | tWW | tHH | tHS | cWW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAUGAAG*CGAAUG*CG*CAC*GGG | 1 |
| CGAUGAAG*CGAAUG*CA*UAU*AGG | 1 |
| CAAUGAAG*CGAAUG*CA*UAU*AAG | 1 |
| AGG*CGAUGAAG*UGAACG*CG*CAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGAA*GAAU**A*G | 2 |
| AAUGAA*GAAU**A*A | 1 |
| G*GAUGAA*GAAC**A | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-cWW-tSH-tHH-F-tHS-cWW-cWW-cWW-F
- Heat map statistics
- Min 0.08 | Avg 0.13 | Max 0.24
Coloring options: